Mapping Averaged Pairwise Information (MAPI): a new exploratory tool to uncover spatial structure.

Abstract : 1. Visualisation of spatial networks based on pairwise metrics such as (dis)similarity coefficients provides direct information on spatial organisation of biological syste ms. However, for large networks, graphical representations are often unreadable as nodes (samples), and edges (links between sa mples) strongly overl ap. We present a new method, MAPI, allowing translation from sp atial networks to variation surfaces. 2. MAPI relies on (i) a spatial network in which samples are linked by ellipses and (ii) a grid of hexagonal cells encompassing the study area. Pairwise metric values are attributed to ellipses and averaged within the cells they intersect. The resulting surf ace of variation can be displayed as a colour map in Geographical Information System (GIS), along with other relevant layers, such as land cover. The method also allows the identification of significant discontinuities in grid cell values through a nonparametric randomisation procedure. 3. The interest of MAPI is here demonstrated in the field of spatial and landsc ape genetics. Using simulated test data sets, as well as observed data from three biological models, we show that MAPI is (i) relatively insensi tive to confound ing effects resulting fro m isolation by distance (i.e. over-structuring), (ii) efficient in detecting barriers when they are not too permeable to gene flow and, (iii) useful to explore relationships between spatial genetic patterns and landscape features. 4. MAPI is freely provided as a PostgreSQL/PostGIS data base extension allowing easy interaction with GIS or the R software and other programming languages. Although developed for spatial and landscape genetics, the method can also be useful to visualise spatial organisation from other kinds of data from which pairwise metrics can be computed.
Type de document :
Article dans une revue
Methods in Ecology and Evolution, Wiley, 2016, 7, pp.1463-1475 〈10.1111/2041-210X.12616〉
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Contributeur : Martine Lacalle <>
Soumis le : mercredi 12 avril 2017 - 11:28:54
Dernière modification le : mardi 10 octobre 2017 - 11:01:12

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Sylvain Piry, Marie Pierre Chapuis, Bertrand Gauffre, Julien Papaix, Astrid Cruaud, et al.. Mapping Averaged Pairwise Information (MAPI): a new exploratory tool to uncover spatial structure.. Methods in Ecology and Evolution, Wiley, 2016, 7, pp.1463-1475 〈10.1111/2041-210X.12616〉. 〈hal-01506806〉

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