H. E. Dossier, R. B. Wicker-références-bibliographiques-abramovitch, M. , and G. B. , AvrPtoB: a bacterial type III effector that both elicits and suppresses programmed cell death associated with plant immunity, FEMS Microbiology Letters, vol.245, pp.1-8, 2005.

M. Achtman, Evolution, Population Structure, and Phylogeography of Genetically Monomorphic Bacterial Pathogens, Annual Review of Microbiology, vol.62, issue.1, pp.53-70, 2008.
DOI : 10.1146/annurev.micro.62.081307.162832

P. Agapow and A. Burt, Indices of multilocus linkage disequilibrium, Molecular Ecology Notes, vol.90, issue.1-2, pp.101-102, 2001.
DOI : 10.1073/pnas.93.2.770

F. Ailloud, Le pouvoir pathogène chez Ralstonia solanacearum phylotype II: génomique intégrative et paysages transcriptomiques en relation avec l'adaptation à l'hôte. PhD, Faculté des Sciences et Technologies, 2015.

F. Ailloud, T. Lowe, G. Cellier, D. Roche, C. Allen et al., Comparative genomic analysis of Ralstonia solanacearum reveals candidate genes for host specificity, BMC Genomics, vol.469, issue.7328, pp.270-280, 2015.
DOI : 10.1186/s12864-015-1474-8

G. Albuquerque, L. Santos, K. Felix, C. Rollemberg, A. Silva et al., from Brazil Extend Known Diversity in Paraphyletic Phylotype II, Phytopathology, vol.104, issue.11, pp.1175-1182, 2014.
DOI : 10.1094/PHYTO-12-13-0334-R

A. C. Alfenas, R. G. Mafia, R. C. Sartorio, D. H. Binoti, R. R. Silva et al., Ralstonia solanacearum em viveiros clonais de eucalipto no Brasil, Fitopatologia Brasileira, vol.31, issue.4, pp.357-366, 2006.
DOI : 10.1590/S0100-41582006000400005

N. F. Almeida, S. C. Yan, R. M. Cai, C. R. Clarke, C. E. Morris et al., PAMDB, A Multilocus Sequence Typing and Analysis Database and Website for Plant-Associated Microbes, Phytopathology, vol.100, issue.3, pp.208-215, 2010.
DOI : 10.1094/PHYTO-100-3-0208

E. Ambrose, Moko disease control: the Grenada experience. Pages 108-114. in: Improving Citrus and Banana production in the Caribbean through sanitation: Seminar proceedings, 1987.

A. Angot, N. Peeters, E. Lechner, F. Vailleau, C. Baud et al., Ralstonia solanacearum requires F-box-like domain- Dossier HDR ? E. WICKER containing type III effectors to promote disease on several host plants, Proceedings of the National Academy of Sciences of the United States of America, pp.14620-14625, 2006.
DOI : 10.1073/pnas.0509393103

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1600009

G. Ano, Y. Hebert, P. Prior, and C. M. Messiaen, A new source of resistance to bacterial wilt of eggplants obtained from a cross: Solanum aethiopicum L ?? Solanum melongena L, Agronomie, vol.11, issue.7, pp.555-560, 1991.
DOI : 10.1051/agro:19910703

URL : https://hal.archives-ouvertes.fr/hal-00885397

V. Aritua, N. Parkinson, R. Thwaites, J. V. Heeney, D. R. Jones et al., Characterization of the Xanthomonas sp causing wilt of enset and banana and its proposed reclassification as a strain of Xvasicola, Plant Pathology, vol.57, issue.1, pp.170-177, 2008.

H. P. Bais, B. Prithiviraj, A. K. Jha, F. M. Ausubel, and J. M. Vivanco, Mediation of pathogen resistance by exudation of antimicrobials from roots, Nature, vol.17, issue.7030, pp.217-238, 2005.
DOI : 10.1016/0885-5765(92)90066-5

D. A. Baltrus, M. T. Nishimura, A. Romanchuk, J. H. Chang, M. S. Mukhtar et al., Dynamic Evolution of Pathogenicity Revealed by Sequencing and Comparative Genomics of 19 Pseudomonas syringae Isolates, PLoS Pathogens, vol.4, issue.2, 2011.
DOI : 10.1371/journal.ppat.1002132.s028

A. Barbary, A. Palloix, A. Fazari, N. Marteu, P. Castagnone-sereno et al., The plant genetic background affects the efficiency of the pepper major nematode resistance genes Me1 and Me3, Theoretical and Applied Genetics, vol.2, issue.2, pp.499-507, 2014.
DOI : 10.1007/s00122-013-2235-1

C. Bartoli, J. R. Lamichhane, O. Berge, C. Guilbaud, L. Varvaro et al., A framework to gauge the epidemic potential of plant pathogens in environmental reservoirs: the example of kiwifruit canker, Molecular Plant Pathology, vol.30, issue.2, pp.137-149, 2015.
DOI : 10.1111/mpp.12167

M. Bernoux, T. Timmers, A. Jauneau, C. Briere, P. De-wit et al., RD19, an Arabidopsis Cysteine Protease Required for RRS1-R-Mediated Resistance, Is Relocalized to the Nucleus by the Ralstonia solanacearum PopP2 Effector, THE PLANT CELL ONLINE, vol.20, issue.8, pp.2252-2264, 2008.
DOI : 10.1105/tpc.108.058685

C. Cardozo, P. Rodriguez, J. M. Cotes, and M. Marin, Variabilidad genética de la bacteria Ralstonia solanacearum en la zona bananera de Uraba (Colombia) [Genetic variability of the bacterium Ralstonia solanacearum (Burkholderiales: Burholderiaceae) in the banana-growing region of Uraba (Colombia)], Revista de Biologia Tropical, vol.58, issue.1, pp.31-44, 2010.

A. Carmeille, C. Caranta, J. Dintinger, P. Prior, J. Luisetti et al., Identification of QTLs for Ralstonia solanacearum race 3-phylotype II resistance in tomato, Theoretical and Applied Genetics, vol.136, issue.1, pp.110-131, 2006.
DOI : 10.1007/s00122-006-0277-3

E. Castellani, Su un marciume dell'Ensete [A rot of the Ensete], pp.297-300, 1939.

G. Cellier, A. Moreau, A. Chabirand, B. Hostachy, F. Ailloud et al., A Duplex PCR Assay for the Detection of Ralstonia solanacearum Phylotype II Strains in Musa spp., PLOS ONE, vol.95, issue.3, 2015.
DOI : 10.1371/journal.pone.0122182.t006

L. Ciampi, L. Sequeira, F. , and E. R. , Latent infection of potato tubers byPseudomonas solanacearum, American Potato Journal, vol.45, issue.8, pp.377-386, 1980.
DOI : 10.1007/BF02854329

C. R. Clarke, D. J. Studholme, B. Hayes, B. Runde, A. Weisberg et al., Race 3 Biovar 2 and Screening for Sources of Resistance Against Its Core Effectors, Phytopathology, vol.105, issue.5, pp.597-607
DOI : 10.1094/PHYTO-12-14-0373-R

F. M. Cohan, Towards a conceptual and operational union of bacterial systematics, ecology, and evolution, Philosophical Transactions of the Royal Society B: Biological Sciences, vol.53, issue.6, pp.1985-1996, 2006.
DOI : 10.1099/ijs.0.02713-0

H. D. Coletta-filho and M. A. Machado, from Citrus in S??o Paulo State, Brazil, Phytopathology, vol.93, issue.1, pp.28-34, 2003.
DOI : 10.1094/PHYTO.2003.93.1.28

D. Cook, E. Barlow, and L. Sequeira, : Detection of Restriction Fragment Length Polymorphisms with DNA Probes That Specify Virulence and the Hypersensitive Response, Molecular Plant-Microbe Interactions, vol.2, issue.3, pp.113-121, 1989.
DOI : 10.1094/MPMI-2-113

D. Cook and L. Sequeira, Strain differentiation of Pseudomonas solanacearum by molecular genetic methods. Pages 77-94. in: Bacterial wilt-The disease and ist causative agent, Pseudomonas solanacearum, CAB International, 1994.

D. E. Cook, C. H. Mesarich, and B. P. Thomma, Understanding Plant Immunity as a Surveillance System to Detect Invasion, Annual Review of Phytopathology, vol.53, issue.1, pp.541-63, 2015.
DOI : 10.1146/annurev-phyto-080614-120114

B. Coupat-goutaland, D. Bernillon, A. Guidot, P. Prior, X. Nesme et al., Virulence Increased Following Large Interstrain Gene Transfers by Natural Transformation, Molecular Plant-Microbe Interactions, vol.24, issue.4, pp.497-505, 2011.
DOI : 10.1094/MPMI-09-10-0197

B. Coupat, F. Chaumeille-dole, S. Fall, P. Prior, P. Simonet et al., Natural transformation in the Ralstonia solanacearum species complex: number and size of DNA that can be transferred, FEMS Microbiology Ecology, vol.66, issue.1, pp.14-24, 2008.
DOI : 10.1111/j.1574-6941.2008.00552.x

URL : https://hal.archives-ouvertes.fr/hal-00338013

T. A. Coutinho, L. Van-der-westhuizen, J. Roux, S. A. Mcfarlane, and S. N. Venter, clone in South Africa, Plant Pathology, vol.64, issue.3, pp.576-581, 2015.
DOI : 10.1111/ppa.12298

P. Harrison, R. Habas, R. Rivallan, P. Francois, C. Poiron et al., The banana (Musa acuminata) genome and the evolution of monocotyledonous plants, Nature, vol.488, issue.7410, pp.213-220, 1038.
URL : https://hal.archives-ouvertes.fr/hal-00855582

R. N. Das, L. I. Sly, and M. Fegan, Molecular diversity of moko disease causing strains of Ralstonia solanacearum. Pages 75. in: The 4th International Bacterial Wilt Symposium, 2006.

M. C. Daunay, H. Laterrot, J. W. Scott, P. Hanson, W. et al., Tomato resistance to bacterial wilt caused by Ralstonia solanaearum E.F. Smith: ancestry and peculiarities, Tomato Genetics Cooperative Report, vol.60, pp.6-40, 2010.

P. Deberdt, J. Guyot, R. Coranson-beaudu, J. Launay, M. Noreskal et al., in French Guiana Expands Knowledge of the ???Emerging Ecotype???, Diversity of Ralstonia solanacearum in French Guiana expands knowledge on the "emerging ecotype, pp.586-596, 2014.
DOI : 10.1094/PHYTO-09-13-0264-R

T. P. Denny, Plant pathogenic Ralstonia species. Pages 573-644. in: Plant-associated bacteria, 2006.
DOI : 10.1007/978-1-4020-4538-7_16

L. Deslandes, J. Olivier, F. Theulieres, J. Hirsch, D. Feng et al., Resistance to Ralstonia solanacearum in Arabidopsis thaliana is conferred by the recessive RRS1-R gene, a member of a novel family of resistance genes, Proceedings of the National Academy of Sciences of the United States of America, pp.2404-2409, 2002.
DOI : 10.1073/pnas.032485099

L. Deslandes, J. Olivier, N. Peeters, F. Dong, X. Khounlotham et al., Physical interaction between RRS1-R, a protein conferring resistance to bacterial wilt, and PopP2, a type III effector targeted to the plant nucleus, Proceedings of the National Academy of Sciences of the United States of America, pp.8024-8029, 2003.
DOI : 10.1073/pnas.1230660100

L. Deslandes and S. Genin, Opening the Ralstonia solanacearum type III effector tool box: insights into host cell subversion mechanisms, Current Opinion in Plant Biology, vol.20, pp.110-117, 2014.
DOI : 10.1016/j.pbi.2014.05.002

M. D. Diallo, C. L. Monteil, B. A. Vinatzer, C. R. Clarke, C. Glaux et al., Pseudomonas syringae naturally lacking the canonical type III secretion system are ubiquitous in nonagricultural habitats, are phylogenetically diverse and can be pathogenic, The ISME Journal, vol.101, issue.7, pp.1325-1335, 2012.
DOI : 10.1093/jhered/92.4.371

X. Didelot and D. Falush, Inference of Bacterial Microevolution Using Multilocus Sequence Data, Genetics, vol.175, issue.3, pp.1251-66, 2007.
DOI : 10.1534/genetics.106.063305

B. Digat, Survey of bacterial wilt of solanaceous crops in French West Indies and in French Guyana. Pages 19, 1967.

G. Erbs and M. A. Newman, The role of lipopolysaccharide and peptidoglycan, two glycosylated bacterial microbe-associated molecular patterns (MAMPs), in plant innate immunity, Molecular Plant Pathology, vol.125, issue.1, pp.95-104, 2012.
DOI : 10.1111/j.1364-3703.2011.00730.x

D. Falush and R. Bowden, Genome-wide association mapping in bacteria?, Trends in Microbiology, vol.14, issue.8, pp.353-358, 2006.
DOI : 10.1016/j.tim.2006.06.003

E. Fargier, M. Fischer-le-saux, and C. Manceau, A multilocus sequence analysis of Xanthomonas campestris reveals a complex structure within crucifer-attacking pathovars of this species, Systematic and Applied Microbiology, vol.34, issue.2, pp.156-165, 2011.
DOI : 10.1016/j.syapm.2010.09.001

M. Fegan and P. Prior, How complex is the "Ralstonia solanacearum species complex, 2002.

M. Fegan, Bacterial wilt diseases of banana: evolution and ecology. Pages 379-386. in: Bacterial Wilt Disease and the Ralstonia solanacearum species complex C, 2005.

M. Fegan and P. Prior, How complex is the "Ralstonia solanacearum species complex". Pages 449-462. in: Bacterial wilt disease and the Ralstonia solanacearum species complex, 2005.

M. Fegan and P. Prior, species complex cause bacterial wilts of banana, Australasian Plant Pathology, vol.12, issue.2, pp.93-101, 2006.
DOI : 10.1071/AP05105

E. J. Feil, B. C. Li, D. M. Aanensen, W. P. Hanage, and B. G. Spratt, eBURST: Inferring Patterns of Evolutionary Descent among Clusters of Related Bacterial Genotypes from Multilocus Sequence Typing Data, Journal of Bacteriology, vol.186, issue.5, pp.1518-1548, 2004.
DOI : 10.1128/JB.186.5.1518-1530.2004

Z. Flores-cruz, A. , and C. , Necessity of OxyR for the Hydrogen Peroxide Stress Response and Full Virulence in Ralstonia solanacearum, Applied and Environmental Microbiology, vol.77, issue.18, pp.6426-6432, 2011.
DOI : 10.1128/AEM.05813-11

N. Fonseca, L. Guimaraes, P. Hermenegildo, R. Teixeira, C. Lopes et al., spp. in Brazil, Forest Pathology, vol.39, issue.(Supl.), pp.107-116, 2014.
DOI : 10.1111/efp.12073

URL : https://hal.archives-ouvertes.fr/hal-01489503

E. R. French and L. Sequeira, Strains of Pseudomonas solanacearum from Central and South America: A Comparative Study, Phytopathology, vol.60, issue.3, pp.506-512, 1970.
DOI : 10.1094/Phyto-60-506

P. Frossard, Moko disease threatens the West Indies. Pages 115-120. in: Improving Citrus and Banana production in the Caribbean through sanitation: Seminar proceedings, 1987.

H. Fukuoka, T. Hirai, T. Okuda, Y. Shigematsu, A. Sasao et al., Comparison of the added value of contrastenhanced 3D fluid-attenuated inversion recovery and magnetization-prepared rapid acquisition of gradient echo sequences in relation to conventional postcontrast T1- weighted images for the evaluation of leptomeningeal diseases at 3T, AJNR. American journal of neuroradiology, issue.5, pp.31868-73, 2010.

E. Gaulin, C. Jacquet, A. Bottin, and B. Dumas, Root rot disease of legumes caused by Aphanomyces euteiches, Molecular Plant Pathology, vol.107, issue.3, pp.539-548, 2007.
DOI : 10.1111/j.1365-2761.1995.tb00302.x

E. Gaulin, M. A. Madoui, A. Bottin, C. Jacquet, C. Mathe et al., Transcriptome of Aphanomyces euteiches: New Oomycete Putative Pathogenicity Factors and Metabolic Pathways, PLoS ONE, vol.322, issue.3, 2008.
DOI : 10.1371/journal.pone.0001723.t003

URL : https://hal.archives-ouvertes.fr/hal-00320699

S. Genin, D. , and T. P. , Species Complex, Annual Review of Phytopathology, vol.50, issue.1, pp.67-89, 2012.
DOI : 10.1146/annurev-phyto-081211-173000

URL : https://hal.archives-ouvertes.fr/hal-01131069

E. T. Gonzalez, D. G. Brown, J. K. Swanson, A. , and C. Doi, Using the Ralstonia solanacearum Tat Secretome To Identify Bacterial Wilt Virulence Factors, Applied and Environmental Microbiology, vol.73, issue.12, pp.3779-378602999, 2007.
DOI : 10.1128/AEM.02999-06

B. Grey and T. Steck, The Viable But Nonculturable State of Ralstonia solanacearum May Be Involved in Long-Term Survival and Plant Infection, Applied and Environmental Microbiology, vol.67, issue.9, pp.3866-3872, 2001.
DOI : 10.1128/AEM.67.9.3866-3872.2001

V. Grimault, J. Schmidt, and P. Prior, Some characteristics involved in bacterial wilt (PSeudomonas solanacearum) resistance in tomato, 1993.

I. Grissa, P. Bouchon, C. Pourcel, and G. Vergnaud, On-line resources for bacterial micro-evolution studies using MLVA or CRISPR typing, Biochimie, vol.90, issue.4, pp.660-668, 2008.
DOI : 10.1016/j.biochi.2007.07.014

URL : https://hal.archives-ouvertes.fr/hal-00195167

A. Guidot, P. Prior, J. Schoenfeld, S. Carrere, S. Genin et al., Genomic Structure and Phylogeny of the Plant Pathogen Ralstonia solanacearum Inferred from Gene Distribution Analysis, Journal of Bacteriology, vol.189, issue.2, pp.377-387, 2007.
DOI : 10.1128/JB.00999-06

A. Guidot, M. Elbaz, S. Carrère, M. I. Siri, M. J. Pianzzola et al., and Their Potential Use for Strain Detection, Phytopathology, vol.99, issue.9, pp.1105-1112, 2009.
DOI : 10.1094/PHYTO-99-9-1105

J. Guinard, A. Latreille, F. Guérin, S. Poussier, and E. Wicker, A new MLVA scheme for fine-tune monitoring and microevolution study of Ralstonia solanacearum phylotype I populations, BMC Microbiology soumis, 2015.

A. Hajri, C. Brin, G. Hunault, F. Lardeux, C. Lemaire et al., A "repertoire for repertoire" hypothesis: repertoires of type three effectors are candidate determinants of host specificity in Xanthomonas, PLoS One, vol.4, issue.8, 2009.
URL : https://hal.archives-ouvertes.fr/hal-00729932

P. M. Hanson, O. Licardo, S. Hanudin, J. Wang, C. et al., Diallel Analysis of Bacterial Wilt Resistance in Tomato Derived from Different Sources, Plant Disease, vol.82, issue.1, pp.74-78, 1998.
DOI : 10.1094/PDIS.1998.82.1.74

A. C. Hayward, Biology and Epidemiology of Bacterial Wilt Caused by Pseudomonas Solanacearum, Annual Review of Phytopathology, vol.29, issue.1, pp.65-87, 1991.
DOI : 10.1146/annurev.py.29.090191.000433

A. C. Hayward, The hosts of Pseudomonas solanacearum. Pages 9-24. in: Bacterial wilt - The disease and its causative agent, 1994.

E. B. Holub, C. R. Grau, P. , and J. L. , Evaluation of the forma specialis concept in Aphanomyces euteiches, Mycological Research, vol.95, issue.2, pp.147-157, 1991.
DOI : 10.1016/S0953-7562(09)81004-6

M. J. Hubisz, D. Falush, M. Stephens, and J. K. Pritchard, Inferring weak population structure with the assistance of sample group information, Molecular Ecology Resources, vol.101, issue.5, pp.1322-1354, 2009.
DOI : 10.1111/j.1755-0998.2009.02591.x

B. Janzac, F. Fabre, A. Palloix, and B. Moury, Constraints on evolution of virus avirulence factors predict the durability of corresponding plant resistances, Molecular Plant Pathology, vol.155, issue.5, 2009.
DOI : 10.1111/j.1364-3703.2009.00554.x

T. X. Jaunet, W. , and J. , Race 1 Isolated from Tomato in Taiwan, Phytopathology, vol.89, issue.4, pp.320-327, 1999.
DOI : 10.1094/PHYTO.1999.89.4.320

R. Johnson, A Critical Analysis of Durable Resistance, Annual Review of Phytopathology, vol.22, issue.1, pp.309-330, 1984.
DOI : 10.1146/annurev.py.22.090184.001521

R. Johnson, Durability of Disease Resistance in Crops -Some Closing Remarks About the Topic and the Symposium. Pages 283-300, 1993.

T. Jombart, S. Devillard, A. B. Dufour, and D. Pontier, Revealing cryptic spatial patterns in genetic variability by a new multivariate method, Heredity, vol.28, issue.1, pp.92-103, 2008.
DOI : 10.1007/BF01031609

URL : https://hal.archives-ouvertes.fr/hal-00428188

T. Jombart, S. Devillard, and F. Balloux, Discriminant analysis of principal components: a new method for the analysis of genetically structured populations, BMC Genetics, vol.11, issue.1, p.94, 2010.
DOI : 10.1186/1471-2156-11-94

URL : https://hal.archives-ouvertes.fr/hal-00539267

F. R. Jones and C. Drechsler, Root rot of peas in the United States caused by Aphanomyces euteiches, Journal of Agricultural Research, vol.30, issue.4, pp.293-325, 1925.

J. D. Jones and J. L. Dangl, The plant immune system, Nature, vol.308, issue.7117, pp.323-332, 2006.
DOI : 10.1038/nature05286

N. H. Kim, H. W. Choi, and B. K. Hwang, Effector AvrBsT Induces Cell Death in Pepper, but Suppresses Defense Responses in Tomato, Molecular Plant-Microbe Interactions, vol.23, issue.8, pp.1069-82, 2010.
DOI : 10.1094/MPMI-23-8-1069

M. W. Kirzinger and J. Stavrinides, Host specificity determinants as a genetic continuum, Trends in Microbiology, vol.20, issue.2, pp.88-93, 2012.
DOI : 10.1016/j.tim.2011.11.006

F. Labrousse, Notes de pathologie végétale, pp.71-84, 1933.

D. Lafortune, M. Beramis, A. Daubeze, N. Boissot, and A. Palloix, Partial Resistance of Pepper to Bacterial Wilt Is Oligogenic and Stable Under Tropical Conditions, Plant Disease, vol.89, issue.5, pp.501-506, 2005.
DOI : 10.1094/PD-89-0501

L. Roux, C. Huet, G. Jauneau, A. Camborde, L. Tremousaygue et al., A receptor pair with an integrated decoy converts pathogen disabling of transcription factors to immunity, Cell, vol.161, issue.5, pp.1074-88, 2015.

A. Lebeau, Résistance de la tomate, l'aubergine et le piment à Ralstonia solanacearum : interactions entre les géniteurs de résistance et la diversité bactérienne, 2010.

. Phd, Faculté des Sciences et Technologies

A. Lebeau, M. C. Daunay, A. Frary, A. Palloix, J. F. Wang et al., Species Complex, Phytopathology, vol.101, issue.1, pp.154-165, 2011.
DOI : 10.1094/PHYTO-02-10-0048

A. Lebeau, M. Gouy, M. Daunay, E. Wicker, F. Chiroleu et al., Genetic mapping of a major dominant gene for resistance to Ralstonia solanacearum in eggplant, Theoretical and Applied Genetics, vol.136, issue.1, pp.143-158, 2013.
DOI : 10.1007/s00122-012-1969-5

A. Leduc, Y. N. Traore, K. Boyer, M. Magne, P. Grygiel et al., Bridgehead invasion of a monomorphic plant pathogenic bacterium: Xanthomonas citri pv. citri, an emerging citrus pathogen in Mali and Burkina Faso, Environ Microbiol, 2015.
URL : https://hal.archives-ouvertes.fr/hal-01456724

T. Leroy, L. Cam, B. Lemaire, and C. , When virulence originates from non-agricultural hosts: New insights into plant breeding, Infection, Genetics and Evolution, vol.27, pp.521-530, 2014.
DOI : 10.1016/j.meegid.2013.12.022

URL : https://hal.archives-ouvertes.fr/hal-01210001

C. A. Lopes, S. I. Carvalho, and L. S. Boiteux, Prevalence of biovar 3 on bell peppers in Brazil and identification of biovar-specific response to Ralstonia solanacearum in Capsicum germplasm. Pages 88. in: The 4th International Bacterial Wilt Symposium, 2006.

A. P. Macho, A. Guidot, P. Barberis, C. R. Beuzcon, and S. Genin, Type III Effector Mutant Strains with Reduced Fitness in Host Plants, Molecular Plant-Microbe Interactions, vol.23, issue.9, pp.1197-1205, 2010.
DOI : 10.1094/MPMI-23-9-1197

G. Mahbou-somo-toukam, G. Cellier, E. Wicker, C. Guilbaud, R. Kahane et al., Broad Diversity of Ralstonia solanacearum Strains in Cameroon, Plant disease, issue.11, pp.931123-1130, 2009.

J. Mansfield, S. Genin, S. Magori, V. Citovsky, M. Sriariyanum et al., Top 10 plant pathogenic bacteria in molecular plant pathology, Molecular Plant Pathology, vol.23, issue.2, pp.614-629, 2012.
DOI : 10.1111/j.1364-3703.2012.00804.x

D. P. Martin, P. Lemey, M. Lott, V. Moulton, D. Posada et al., RDP3: a flexible and fast computer program for analyzing recombination, Bioinformatics, vol.26, issue.19, pp.2462-2463, 2010.
DOI : 10.1093/bioinformatics/btq467

N. Mhedbi-hajri, A. Darrasse, S. Pigne, K. Durand, S. Fouteau et al., Sensing and adhesion are adaptive functions in the plant pathogenic xanthomonads, BMC Evolutionary Biology, vol.13, issue.5, pp.1471-2148, 2011.
DOI : 10.1093/oxfordjournals.molbev.a004148

M. G. Milgroom and T. L. Peever, Population Biology of Plant Pathogens: The Synthesis of Plant Disease Epidemiology and Population Genetics, Plant Disease, vol.87, issue.6, pp.608-617, 2003.
DOI : 10.1094/PDIS.2003.87.6.608

A. Milling, F. H. Meng, T. P. Denny, A. , and C. , Race 3 Biovar 2, Phytopathology, vol.99, issue.10, pp.1127-1134, 2009.
DOI : 10.1094/PHYTO-99-10-1127

C. L. Monteil, R. Cai, H. Liu, M. Llontop, M. E. Leman et al., crop pathogens, New Phytologist, vol.18, issue.Suppl 2, pp.800-811, 2013.
DOI : 10.1111/nph.12316

S. M. Morse, Factors in the Emergence of Infectious Diseases, Emerging Infectious Diseases, vol.1, issue.1, pp.7-15, 1995.
DOI : 10.3201/eid0101.950102

G. P. Munkvold, W. M. Cralton, E. C. Brummer, J. R. Meyer, D. J. Undersander et al., in Alfalfa Cultivars, Plant Disease, vol.85, issue.3, pp.328-333, 2001.
DOI : 10.1094/PDIS.2001.85.3.328

M. Mwangi, R. Bandyopadhyay, P. Ragama, and W. K. Tushemereirwe, Assessment of banana planting practices and cultivar tolerance in relation to management of soilborne Xanthomonas campestris pv musacearum, Crop Protection, vol.26, issue.8, pp.1203-1208, 2007.
DOI : 10.1016/j.cropro.2006.10.017

M. Mwangi, M. Mwebaze, R. Bandyopadhyay, V. Aritua, S. Eden-green et al., Development of a semiselective medium for isolating Xanthomonas campestris pv. musacearum from insect vectors, infected plant material and soil, Plant Pathology, vol.58, issue.3, pp.383-390, 2007.
DOI : 10.1111/j.1365-3059.2007.01564.x

N. 'guessan and A. C. , Phylogénie, structure génétique et diversité de virulence de Ralstonia solanacearum, agent du flétrissement bactérien, en Côte d'Ivoire. PhD, 2013.

N. 'guessan, A. C. Pensec, F. Lemaire, C. Lefeuvre, P. Wicker et al., Molecular epidemiology and virulence typing of Ralstonia solanacearum raise new prospects for Dossier HDR ? E. WICKER sustainable control of Solanacae bacterial wilt, The 13th International Conference on Plant Pathogenic Bacteria G. Y. Chen, 2014.

N. 'guessan, C. A. Abo, K. Fondio, L. Chiroleu, F. Lebeau et al., Populations from C??te d'Ivoire in Africa, Phytopathology, vol.102, issue.8, pp.733-740, 2012.
DOI : 10.1094/PHYTO-11-11-0300

N. 'guessan, C. A. Brisse, S. , L. Roux-nio, A. Poussier et al., Development of variable number of tandem repeats typing schemes for Ralstonia solanacearum, the agent of bacterial wilt, banana Moko disease and potato brown rot, Journal of Microbiological Methods, vol.92, issue.3, pp.366-374, 2013.
DOI : 10.1016/j.mimet.2013.01.012

URL : https://hal.archives-ouvertes.fr/hal-01199311

Y. Nakamura, T. Oitoh, H. Matsuda, and T. Gojobori, Biased biological functions of horizontally transferred genes in prokaryotic genomes, Nature Genetics, vol.4, issue.7, pp.760-766, 2004.
DOI : 10.1046/j.1365-2958.1997.3101672.x

E. Neretti, Etude de la structuration des populations de Ralstonia solanacearum en Martinique par le phylotype et la géographie, Master 2 Professionnel "Gestion de la Qualité des Productions Végétales, 2008.

D. Norman, M. Zapata, D. W. Gabriel, Y. P. Duan, J. M. Yuen et al., Strains Entering North America, Phytopathology, vol.99, issue.9, pp.1070-1077, 2009.
DOI : 10.1094/PHYTO-99-9-1070

T. Nunome, T. Yoshida, and M. Hirai, Genetic linkage map of eggplant (Solanum melongena L.). Pages 239-242, Xth EUCARPIA Meeting on Genetics and Breeding on Capsicum and Eggplant A. Palloix, and M.-C. Daunay INRA Editions, 1998.

T. Nunome, S. Negoro, I. Kono, H. Kanamori, K. Miyatake et al., Development of SSR markers derived from SSR-enriched genomic library of eggplant (Solanum melongena L.), Theoretical and Applied Genetics, vol.114, issue.5, pp.1143-1153, 2009.
DOI : 10.1007/s00122-009-1116-0

C. Ottmann, B. Luberacki, I. Kufner, W. Koch, F. Brunner et al., A common toxin fold mediates microbial attack and plant defense, Proceedings of the National Academy of Sciences, vol.106, issue.25, pp.10359-64, 2009.
DOI : 10.1073/pnas.0902362106

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2695407

A. Palloix, V. Ayme, and B. Moury, Durability of plant major resistance genes to pathogens depends on the genetic background, experimental evidence and consequences for breeding strategies, New Phytologist, vol.34, issue.1, pp.190-199, 2009.
DOI : 10.1111/j.1469-8137.2009.02827.x

B. Pariaud, V. Ravigne, F. Halkett, H. Goyeau, J. Carlier et al., Aggressiveness and its role in the adaptation of plant pathogens, Plant Pathology, vol.15, issue.3, pp.409-424, 2009.
DOI : 10.1111/j.1365-3059.2009.02039.x

N. Parkinson, C. Cowie, J. Heeney, and D. Stead, Phylogenetic structure of Xanthomonas determined by comparison of gyrB sequences, INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, vol.59, issue.2, pp.264-74, 2009.
DOI : 10.1099/ijs.0.65825-0

N. Peeters, S. Carrere, M. Anisimova, L. Plener, A. C. Cazale et al., Repertoire, unified nomenclature and evolution of the Type III effector gene set in the Ralstonia solanacearum species complex, BMC Genomics, vol.14, issue.1, 2013.
DOI : 10.1093/nar/gkr201

F. Pensec, A. Lebeau, M. C. Daunay, F. Chiroleu, A. Guidot et al., Towards the identification of Type III effectors associated to Ralstonia solanacearum virulence on tomato and eggplant, 2015.

M. Perez-losada, P. Cabezas, E. Castro-nallar, and K. A. Crandall, Pathogen typing in the genomics era: MLST and the future of molecular epidemiology, Infection, Genetics and Evolution, vol.16, pp.38-53, 2013.
DOI : 10.1016/j.meegid.2013.01.009

M. Pilet-nayel, J. M. Kraft, R. J. Mcgee, F. J. Muehlbauer, A. Baranger et al., Quantitative Trait Loci mapping for Aphanomyces root rot resistance in pea, 4th European Conference on Grain Legumes -Towards the sustainable production of healthy food, feed and novel products4th European Conference on Grain Legumes AEP, 2001.

M. Pilet-nayel, F. J. Muehlbauer, R. J. Mcgee, J. M. Kraft, A. Baranger et al., Isolates from the United States and France, Phytopathology, vol.95, issue.11, pp.1287-1293, 2005.
DOI : 10.1094/PHYTO-95-1287

M. Pilet-nayel, C. J. Coyne, C. Hamon, A. Lesné, L. Goff et al., Understanding genetics of partial resistance to Aphanomyces root rot in pea for new breeding prospects, Third Aphanomyces Workshop on Legumes M.-L, pp.34-39, 2007.

M. Poueymiro, S. Cunnac, P. Barberis, L. Deslandes, N. Peeters et al., GMI1000 Determine Host-Range Specificity on Tobacco, Molecular Plant-Microbe Interactions, vol.22, issue.5, pp.538-50, 2009.
DOI : 10.1094/MPMI-22-5-0538

M. Poueymiro and S. Genin, Secreted proteins from Ralstonia solanacearum: a hundred tricks to kill a plant, Current Opinion in Microbiology, vol.12, issue.1, pp.44-52, 2009.
DOI : 10.1016/j.mib.2008.11.008

S. Poussier, Exploration de la diversité génétique de Ralstonia solanacearum, agent du flétrissement bactérien. Détection et dynamique des populations dans les réservoirs d'inoculum, 2000.

P. Prior and H. Steva, Characteristics of Strains of Pseudomonas solanacearum from the French West Indies, Plant Disease, vol.74, issue.1, pp.13-17, 1990.
DOI : 10.1094/PD-74-0013

P. Prior, H. Steva, and P. Cadet, Aggressiveness of Strains of Pseudomonas solanacearum from the French West Indies (Martinique and Guadeloupe) on Tomato, Plant Disease, vol.74, issue.12, pp.962-965, 1990.
DOI : 10.1094/PD-74-0962

P. Prior and M. Fegan, Diversity and molecular detection of Ralstonia solanacearum race 2 strains, 2002.

P. Prior and M. Fegan, Diversity and molecular detection of Ralstonia solanacearum race 2 strains by multiplex PCR. Pages 405-414. in: Bacterial wilt disease and the Ralstonia solanacearum species complex, 2005.

J. K. Pritchard, M. Stephens, and P. Donnelly, Inference of population structure using multilocus genotype data, Genetics, vol.155, issue.2, pp.945-59, 2000.

J. Quenouille, E. Paulhiac, B. Moury, and A. Palloix, Quantitative trait loci from the host genetic background modulate the durability of a resistance gene: a rational basis for sustainable resistance breeding in plants, Heredity, vol.112, issue.6, pp.579-87, 2014.
DOI : 10.1007/s00122-009-0980-y

J. L. Rademaker, B. Hoste, F. J. Louws, K. Kersters, J. Swings et al., Comparison of AFLP and rep-PCR genomic fingerprinting with DNA--DNA homology studies: Xanthomonas as a model system, INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, vol.50, issue.2, 2000.
DOI : 10.1099/00207713-50-2-665

A. Ramsubhag, D. Lawrence, D. Cassie, R. Fraser, P. Umaharan et al., Wide genetic diversity of Ralstonia solanacearum strains affecting tomato in Trinidad, West Indies, Plant Pathology, vol.42, issue.5, pp.61844-857, 2012.
DOI : 10.1111/j.1365-3059.2011.02572.x

B. Remenant, J. C. De-cambiaire, G. Cellier, J. M. Jacobs, S. Mangenot et al., Ralstonia syzygii, the Blood Disease Bacterium and Some Asian R. solanacearum Strains Form a Single Genomic Species Despite Divergent Lifestyles, PLoS ONE, vol.21, issue.9, p.24356, 2011.
DOI : 10.1371/journal.pone.0024356.s005

B. Remenant, L. Babujee, A. Lajus, C. Medigue, P. Prior et al., Sequencing of K60, Type Strain of the Major Plant Pathogen Ralstonia solanacearum, Journal of Bacteriology, vol.194, issue.10, pp.2742-2743, 2012.
DOI : 10.1128/JB.00249-12

P. Remigi, M. Anisimova, A. Guidot, S. Genin, and N. Peeters, Functional diversification of the GALA type III effector family contributes to Ralstonia solanacearum adaptation on different plant hosts, New Phytologist, vol.22, issue.4, pp.976-87, 2011.
DOI : 10.1111/j.1469-8137.2011.03854.x

R. L. Rodriguez, A. Grajales, M. L. Arrieta-ortiz, C. Salazar, S. Restrepo et al., Genomes-based phylogeny of the genus Xanthomonas, BMC Microbiology, vol.12, issue.1, p.43, 2012.
DOI : 10.1186/1471-2180-12-43

J. B. Rorer, A bacterial disease of bananas and plantains, Phytopathology, vol.1, pp.27-52, 1911.

I. Safni, I. Cleenwerck, P. De-vos, M. Fegan, L. Sly et al., Polyphasic taxonomic revision of the Ralstonia solanacearum species complex: proposal to emend the descriptions of Ralstonia solanacearum and Ralstonia syzygii and reclassify current R. syzygii strains as Ralstonia syzygii subsp. syzygii subsp.nov., R. solanacearum phylotype IV strains as Ralstonia syzygii subsp. indonesiensis subsp. nov., banana blood disease bacterium strains as Ralstonia syzygii subsp, 2014.

M. Salanoubat, S. Genin, F. Artiguenave, J. Gouzy, S. Mangenot et al., Genome sequence of the plant pathogen Ralstonia solanacearum, Nature, vol.415, issue.6871, pp.415497-502, 2002.
DOI : 10.1038/415497a

URL : https://hal.archives-ouvertes.fr/hal-00427300

P. K. Sambasivam and D. Girija, Molecular characterization of Ralstonia solanacearum infecting ginger in Kerala, Journal of Ecobiology, vol.20, issue.3, pp.229-237, 2007.

S. Perez, A. Mejia, L. Fegan, M. , A. et al., Diversity and distribution of Ralstonia solanacearum strains in Guatemala and rare occurrence of tomato fruit infection, Plant Pathology, vol.45, issue.2, pp.320-331, 2008.
DOI : 10.1094/PDIS.2002.86.9.987

S. F. Sarkar and D. S. Guttman, Evolution of the Core Genome of Pseudomonas syringae, a Highly Clonal, Endemic Plant Pathogen, Applied and Environmental Microbiology, vol.70, issue.4, pp.1999-2012, 2004.
DOI : 10.1128/AEM.70.4.1999-2012.2004

P. F. Sarris, Z. Duxbury, S. U. Huh, Y. Ma, C. Segonzac et al., A Plant Immune Receptor Detects Pathogen Effectors that Target WRKY Transcription Factors, Cell, vol.161, issue.5, pp.1089-100, 2015.
DOI : 10.1016/j.cell.2015.04.024

URL : http://dx.doi.org/10.1016/j.cell.2015.04.024

L. Sequeira and C. W. Averre, Distribution and pathogenicity of strains of Pseudomonas solanacearum from virgin soils in Costa Rica, Plant Disease Reporter, vol.45, issue.6, pp.435-440, 1961.

L. Sequeira, Bacterial wilt: the missing element in International banana improvement programs. Pages 6-14. in: Bacterial wilt disease: Molecular and ecological aspects P, 1998.

E. B. Silveira, A. M. Gomes, S. J. Michereff, M. , and R. L. , Variability of Ralstonia solanacearum populations causing wilt on tomato in Agreste of Pernambuco, Bacterial Wilt Newsletter, vol.15, pp.8-10, 1998.

A. U. Singer, S. Schulze, T. Skarina, X. Xu, H. Cui et al., A pathogen type III effector with a novel E3 ubiquitin ligase architecture, PLoS Pathog, vol.9, issue.1, 2013.

M. I. Siri, A. Sanabria, and M. J. Pianzzola, Genetic Diversity and Aggressiveness of Ralstonia solanacearum Strains Causing Bacterial Wilt of Potato in Uruguay, Plant disease, issue.10, pp.951292-1301, 2011.

E. F. Smith, A bacterial disease of tomato, eggplant, and Irish potato (Bacterium solanacearum nov. sp.). USDA Div, Veg. Physiol. Pathol. Bull, vol.12, p.191, 1896.

M. Sole, C. Popa, O. Mith, K. Sohn, J. D. Jones et al., Type III Effectors Displaying Virulence and Avirulence Activities, Molecular Plant-Microbe Interactions, vol.25, issue.7, pp.941-953, 2012.
DOI : 10.1094/MPMI-12-11-0321

M. Solé, S. Ehonen, L. Deslandes, S. Genin, and M. Valls, AWR gene family from Ralstonia solanacearum is involved in plant cell-death. Pages 56. in: 9èmes rencontres Plantes-Bactéries d'Aussois V. Verdier, 2010.

B. G. Spratt, Multilocus sequence typing: molecular typing of bacterial pathogens in an era of rapid DNA sequencing and the Internet, Current Opinion in Microbiology, vol.2, issue.3, pp.312-318, 1999.
DOI : 10.1016/S1369-5274(99)80054-X

B. G. Spratt, W. P. Hanage, B. Li, D. M. Aanensen, and E. J. Feil, Displaying the relatedness among isolates of bacterial species ?????? the eBURST approach, FEMS Microbiology Letters, vol.241, issue.2, pp.129-163, 2004.
DOI : 10.1016/j.femsle.2004.11.015

R. Stam, J. Jupe, A. J. Howden, J. A. Morris, P. C. Boevink et al., Identification and Characterisation CRN Effectors in Phytophthora capsici Shows Modularity and Functional Diversity, PLoS ONE, vol.13, issue.3, 2013.
DOI : 10.1371/journal.pone.0059517.s005

J. Stavrinides, Origin and evolution of phytopathogenic bacteria. Pages 1-36. in: Plant pathogenic bacteria -genomics and molecular biology, 2009.

D. J. Studholme, E. Kemen, D. Maclean, S. Schornack, V. Aritua et al., Genome-wide sequencing data reveals virulence factors implicated in banana Xanthomonas???wilt, FEMS Microbiology Letters, vol.310, issue.2, pp.182-92, 2010.
DOI : 10.1111/j.1574-6968.2010.02065.x

D. J. Studholme, A. Wasukira, K. Paszkiewicz, V. Aritua, R. Thwaites et al., Draft Genome Sequences of Xanthomonas sacchari and Two Banana-Associated Xanthomonads Reveal Insights into the Xanthomonas Group 1 Clade, Genes, vol.2, issue.4, pp.1050-65, 2011.
DOI : 10.3390/genes2041050

D. J. Studholme, A. Wasukira, K. Paszkiewicz, V. Aritua, R. Thwaites et al., Draft Genome Sequences of Xanthomonas sacchari and Two Banana-Associated Xanthomonads Reveal Insights into the Xanthomonas Group 1 Clade, Genes, vol.2, issue.4, pp.88-89, 1050.
DOI : 10.3390/genes2041050

E. H. Stukenbrock and B. A. Mcdonald, The Origins of Plant Pathogens in Agro-Ecosystems, Annual Review of Phytopathology, vol.46, issue.1, pp.75-100, 2008.
DOI : 10.1146/annurev.phyto.010708.154114

T. Tamado and P. Milberg, Weed flora in arable fields of eastern Ethiopia with emphasis on the occurrence of Parthenium hysterophorus, Weed Research, vol.35, issue.6, pp.507-521, 2000.
DOI : 10.1046/j.1365-3180.1998.00082.x

R. Terauchi, Y. , and K. , Towards population genomics of effector-effector target interactions, New Phytologist, vol.87, issue.4, pp.929-968, 2010.
DOI : 10.1111/j.1469-8137.2010.03408.x

W. J. Thomas, C. A. Thireault, J. A. Kimbrel, C. , and J. H. , Recombineering and stable integration of the Pseudomonas syringae pv, 2009.

H. Dossier, WICKER genome of the soil bacterium Pseudomonas fluorescens Pf0-1, Plant J, vol.60, issue.5, pp.919-947

R. Thwaites, S. Eden-green, and R. Black, Diseases caused by bacteria. Pages 213-239. in: Diseases of banana, 2000.

L. Tripathi, J. Odipio, J. N. Tripathi, and G. Tusiime, A rapid technique for screening banana cultivars for resistance to Xanthomonas wilt, European Journal of Plant Pathology, vol.40, issue.1, pp.9-19, 2008.
DOI : 10.1007/s10658-007-9235-4

L. Tripathi and J. N. Tripathi, Relative susceptibility of banana cultivars to Xanthomonas campestris pv. musacearum, African Journal of Biotechnology, vol.8, issue.20, pp.5343-5350, 2009.

L. Tripathi, H. Mwaka, J. N. Tripathi, and W. K. Tushemereirwe, Expression of sweet pepper Hrap gene in banana enhances resistance to Xanthomonas campestris pv. musacearum, Molecular Plant Pathology, vol.40, issue.6, pp.721-752, 2010.
DOI : 10.1111/j.1364-3703.2010.00639.x

L. Tripathi, J. N. Tripathi, A. Kiggundu, S. Korie, F. Shotkoski et al., Field trial of Xanthomonas wilt disease-resistant bananas in East Africa, Nature Biotechnology, vol.11, issue.9, pp.868-70, 2014.
DOI : 10.1007/s11248-011-9574-y

M. Turner, A. Jauneau, S. Genin, M. J. Tavella, F. Vailleau et al., Dissection of Bacterial Wilt on Medicago truncatula Revealed Two Type III Secretion System Effectors Acting on Root Infection Process and Disease Development, PLANT PHYSIOLOGY, vol.150, issue.4, pp.1713-1722, 2009.
DOI : 10.1104/pp.109.141523

W. Tushemereirwe, A. Kangire, F. Ssekiwoko, L. C. Offord, J. Crozier et al., First report of Xanthomonas campestris pv. musacearum on banana in Uganda, Plant Pathology, vol.58, issue.6, pp.802-802, 2004.
DOI : 10.1111/j.1365-3059.2004.01090.x

S. Ustun, V. Bartetzko, and F. Bornke, The Xanthomonas campestris type III effector XopJ targets the host cell proteasome to suppress salicylic-acid mediated plant defence, PLoS Pathogens, vol.9, issue.6, 2013.

S. Ustun and F. Bornke, Type III Effector XopJ Proteolytically Degrades Proteasome Subunit RPT6, Plant Physiology, vol.168, issue.1, pp.107-126, 2015.
DOI : 10.1104/pp.15.00132

D. Vallenet, E. Belda, A. Calteau, S. Cruveiller, S. Engelen et al., MicroScope--an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data, Nucleic Acids Research, vol.41, issue.D1, pp.636-683, 2013.
DOI : 10.1093/nar/gks1194

F. Van-den-bosch, G. , and C. A. , Measures of Durability of Resistance, Phytopathology, vol.93, issue.5, pp.616-625, 2003.
DOI : 10.1094/PHYTO.2003.93.5.616

L. Vauterin, B. Hoste, K. Kersters, and J. Swings, Reclassification of Xanthomonas, International Journal of Systematic Bacteriology, vol.45, issue.3, pp.472-489, 1995.
DOI : 10.1099/00207713-45-3-472

C. Verniere, L. Bui-thi-ngoc, P. Jarne, V. Ravigne, F. Guerin et al., in its area of origin, Environmental Microbiology, vol.21, issue.7, pp.2226-2263, 2014.
DOI : 10.1111/1462-2920.12369

URL : https://hal.archives-ouvertes.fr/hal-01456737

B. A. Vinatzer, C. L. Monteil, C. , and C. R. , Harnessing population genomics to understand how bacterial pathogens emerge, 2014.

V. G. Vleeshouwers and R. P. Oliver, Effectors as Tools in Disease Resistance Breeding Against Biotrophic, Hemibiotrophic, and Necrotrophic Plant Pathogens, Molecular Plant-Microbe Interactions, vol.27, issue.3, pp.196-206, 2014.
DOI : 10.1094/MPMI-10-13-0313-IA

V. G. Vleeshouwers, H. Rietman, P. Krenek, N. Champouret, C. Young et al., Effector Genomics Accelerates Discovery and Functional Profiling of Potato Disease Resistance and Phytophthora Infestans Avirulence Genes, PLoS ONE, vol.11, issue.8, p.2875, 2008.
DOI : 10.1371/journal.pone.0002875.s005

M. Vos and X. Didelot, A comparison of homologous recombination rates in bacteria and archaea, The ISME Journal, vol.16, issue.2, pp.199-208, 2009.
DOI : 10.1038/ismej.2008.93

J. Wang, P. Hanson, and J. A. Barnes, Worlwide evaluation of an international set of resistant sources to bacterial wilt in tomato. Pages 269-275, 1998.

J. Wang, J. Olivier, P. Thoquet, B. Mangin, L. Sauviac et al., Pss4 in Taiwan Is Controlled Mainly by a Major Strain-Specific Locus, Molecular Plant-Microbe Interactions, vol.13, issue.1, pp.6-13, 2000.
DOI : 10.1094/MPMI.2000.13.1.6

J. F. Wang, F. I. Ho, H. T. Truong, S. M. Huang, C. H. Balatero et al., Identification of major QTLs associated with stable resistance of tomato cultivar ???Hawaii 7996??? to Ralstonia solanacearum, Euphytica, vol.136, issue.2, pp.241-252
DOI : 10.1007/s10681-012-0830-x

A. Wasukira, J. Tayebwa, R. Thwaites, K. Paszkiewicz, V. Aritua et al., Genome-Wide Sequencing Reveals Two Major Sub-Lineages in the Genetically Monomorphic Pathogen Xanthomonas Campestris Pathovar Musacearum, Genes, vol.3, issue.4, pp.361-377
DOI : 10.3390/genes3030361

A. Wasukira, M. Coulter, N. Al-sowayeh, R. Thwaites, K. Paszkiewicz et al., Genome Sequencing of Xanthomonas vasicola Pathovar vasculorum Reveals Variation in Plasmids and Genes Encoding Lipopolysaccharide Synthesis, Type-IV Pilus and Type-III Secretion Effectors, Pathogens, vol.3, issue.1, pp.211-248, 2014.
DOI : 10.3390/pathogens3010211

S. A. Watt, V. Tellstrom, T. Patschkowski, and K. Niehaus, Identification of the bacterial superoxide dismutase (SodM) as plant-inducible elicitor of an oxidative burst reaction in tobacco cell suspension cultures, Journal of Biotechnology, vol.126, issue.1, pp.78-86, 2006.
DOI : 10.1016/j.jbiotec.2006.02.022

E. Wicker, L. Grassart, D. Mian, C. Beaudu, R. Dufeal et al., Cucumis melo, Cucumis sativus, Cucurbita moschata, and Anthurium spp, new hosts of Ralstonia solanacearum in Martinique, Bacterial Wilt Newsletter, vol.17, pp.20-21, 2002.

E. Wicker, L. Grassart, R. Coranson-beaudu, D. Mian, C. Guilbaud et al., Ralstonia solanacearum Strains from Martinique (French West Indies) Exhibiting a New Pathogenic Potential, Applied and Environmental Microbiology, vol.73, issue.21, pp.6790-6801, 2007.
DOI : 10.1128/AEM.00841-07

E. Wicker, R. Coranson-beaudu, S. Cadasse, and M. A. William, EMERGING STRAINS OF RALSTONIA SOLANACEARUM IN THE FRENCH WEST INDIES RAISE NEW CHALLENGES TO TOMATO BREEDERS, Acta Horticulturae, vol.808, issue.808, pp.279-286, 2009.
DOI : 10.17660/ActaHortic.2009.808.43

E. Wicker, P. Lefeuvre, J. C. Cambiaire, C. Lemaire, S. Poussier et al., Contrasting recombination patterns and demographic histories of the plant pathogen Ralstonia solanacearum inferred from MLSA, The ISME Journal, vol.146, issue.5, pp.961-974, 2012.
DOI : 10.1128/AEM.00180-08

URL : https://hal.archives-ouvertes.fr/hal-01199343

L. Willocquet, S. Jumel, L. , and E. , Spatio-temporal Development of Pea Root Rot Disease through Secondary Infections during a Crop Cycle, Journal of Phytopathology, vol.78, issue.10, pp.623-632, 2007.
DOI : 10.1046/j.1365-3059.2000.00454.x

M. E. Woolhouse, J. P. Webster, E. Domingo, B. Charlesworth, L. et al., Biological and biomedical implications of the co-evolution of pathogens and their hosts, Nature Genetics, vol.31, issue.4, pp.569-77, 2002.
DOI : 10.1126/science.287.5461.2274

M. E. Woolhouse, L. H. Taylor, H. , and D. T. , Population Biology of Multihost Pathogens, Science, vol.292, issue.5519, pp.1109-1112, 2001.
DOI : 10.1126/science.1059026

J. Xu, Z. Pan, P. Prior, J. Xu, Z. Zhang et al., Genetic diversity of Ralstonia solanacearum strains from China, European Journal of Plant Pathology, vol.86, issue.4, pp.641-653, 2009.
DOI : 10.1007/s10658-009-9512-5

E. Yabuuchi, Y. Kosako, H. Oyaizu, I. Yano, H. Hotta et al., Proposal of Burkholderia gen. nov. and transfer of seven species of the genus Pseudomonas homology group II to the new genus, with the type species Burkholderia cepacia (Palleroni and Holmes 1981) comb. nov. Microbiology and immunology, pp.361251-75, 1992.

E. Yabuuchi, Y. Kosako, I. Yano, H. Hotta, and Y. Nishiuchi, Gen. Nov., Proposal of Ralstonia pickettii (Ralston, Palleroni and Doudoroff 1973) comb. Nov., Ralstonia solanacearum (Smith 1896) comb. Nov. and Ralstonia eutropha, pp.897-904, 1969.
DOI : 10.1111/j.1348-0421.1995.tb03275.x

J. Yao, A. , and C. , Chemotaxis Is Required for Virulence and Competitive Fitness of the Bacterial Wilt Pathogen Ralstonia solanacearum, Journal of Bacteriology, vol.188, issue.10, pp.3697-3708, 2006.
DOI : 10.1128/JB.188.10.3697-3708.2006

J. Yao, A. , and C. , The Plant Pathogen Ralstonia solanacearum Needs Aerotaxis for Normal Biofilm Formation and Interactions with Its Tomato Host, Journal of Bacteriology, vol.189, issue.17, pp.6415-6424, 2007.
DOI : 10.1128/JB.00398-07

D. Yirgou and J. F. Bradbury, Bacterial wilt of enset (Ensete ventricosum) incited by Xanthomonas musacearum sp. nov, Phytopathology, vol.58, pp.111-112, 1968.

D. Yirgou and J. F. Bradbury, A note on wilt of banana caused by the enset wilt organism Xanthomonas musacearum, East African Agriculture and Forestry Journal, vol.40, pp.111-114, 1974.

J. M. Young, D. C. Park, H. M. Shearman, and E. Fargier, A multilocus sequence analysis of the genus Xanthomonas, Systematic and Applied Microbiology, vol.31, issue.5, pp.366-77, 2008.
DOI : 10.1016/j.syapm.2008.06.004

Q. Yu, A. M. Alvarez, P. H. Moore, F. Zee, M. S. Kim et al., Isolated from Ginger in Hawaii, Phytopathology, vol.93, issue.9, pp.1124-1130, 2003.
DOI : 10.1094/PHYTO.2003.93.9.1124

J. Zhan and B. A. Mcdonald, Experimental Measures of Pathogen Competition and Relative Fitness, Annual Review of Phytopathology, vol.51, issue.1, pp.131-53, 2013.
DOI : 10.1146/annurev-phyto-082712-102302

J. Zhan, P. H. Thrall, J. Papaix, L. Xie, and J. J. Burdon, Playing on a Pathogen's Weakness: Using Evolution to Guide Sustainable Plant Disease Control Strategies, Annual Review of Phytopathology, vol.53, issue.1, 2015.
DOI : 10.1146/annurev-phyto-080614-120040