F. Tiendrébéogo, P. Lefeuvre, M. Hoareau, M. Harimalala, J. Villemot et al., Evolution of African cassava mosaic virus by recombination between bipartite and monopartite begomoviruses, Virology Journal, vol.9, issue.1, pp.6734-6738, 2012.
DOI : 10.1093/nar/gki352

D. Pande, S. Kraberger, P. Lefeuvre, J. Lett, D. Shepherd et al., A novel maize-infecting mastrevirus from La R??union Island, Archives of Virology, vol.7, issue.Pt 5, pp.1617-1621, 2012.
DOI : 10.1007/s00705-012-1314-y

M. Harimalala, P. Lefeuvre, A. De-bruyn, F. Tiendrébéogo, M. Hoareau et al., A novel cassava-infecting begomovirus from Madagascar: cassava mosaic Madagascar virus, Archives of Virology, vol.2, issue.10, pp.2027-2030, 2012.
DOI : 10.1007/s00705-012-1399-3

I. Zinga, M. Harimalala, A. De-bruyn, M. Hoareau, N. Mandakombo et al., East African cassava mosaic virus-Uganda (EACMV-UG) and African cassava mosaic virus (ACMV) reported for the first time in Central African Republic and Chad, New Disease Reports, vol.26, p.17, 2012.
DOI : 10.5197/j.2044-0588.2012.026.017

A. Monjane, D. Pande, F. Lakay, D. Shepherd, P. Lefeuvre et al., Adaptive evolution by recombination is not associated with increased mutation rates in Maize streak virus, BMC Evolutionary Biology, vol.12, issue.1, pp.252-255, 2012.
DOI : 10.1146/annurev.arplant.57.032905.105421

F. Péréfarres, M. Thierry, P. Lefeuvre, N. Becker, B. Reynaud et al., Biological Invasions of Geminiviruses: Case Study of TYLCV and Bemisia tabaci in Reunion Island, Viruses, vol.4, issue.12, pp.3665-3688, 2012.
DOI : 10.3390/v4123665

I. Zinga, F. Chiroleu, J. Legg, P. Lefeuvre, K. Komba et al., Epidemiological assessment of cassava mosaic disease in Central African Republic reveals the importance of mixed viral infection and poor health of plant cuttings, Crop Protection, vol.44, issue.1, pp.6-1240, 2013.
DOI : 10.1016/j.cropro.2012.10.010

URL : https://hal.archives-ouvertes.fr/hal-01456748

P. Lefeuvre and J. Lett, Molecular characterization of a new alphasatellite associated with a cassava mosaic geminivirus in Madagascar, Archives of Virology, vol.157, issue.211, pp.2027-2030, 2013.
URL : https://hal.archives-ouvertes.fr/hal-01456743

B. Muhire, M. Golden, B. Murrell, P. Lefeuvre, J. Lett et al., Evidence of Pervasive Biologically Functional Secondary Structures within the Genomes of Eukaryotic Single-Stranded DNA Viruses, Journal of Virology, vol.88, issue.4, pp.1972-1989, 2014.
DOI : 10.1128/JVI.03031-13

F. Péréfarres, G. Thébaud, P. Lefeuvre, F. Chiroleu, L. Rimbaud et al., Frequency-dependent assistance as a way out of competitive exclusion between two strains of an emerging virus, Proceedings of the Royal Society B: Biological Sciences, vol.398, issue.6726, pp.20133374-20133379, 2014.
DOI : 10.1038/18913

J. Lett, B. Reynaud, and &. M. Peterschmitt, Les mécanismes de la transmission circulante des virus de végétaux par insectes piqueurs-suceurs, Virologie, vol.5, pp.169-181, 2000.

I. Le, Tomato yellow leaf curl virus (TYLCV) à la Réunion, Phytoma, vol.562, pp.13-17

H. Delatte, J. Lett, P. Lefeuvre, B. Reynaud, and P. Peterschmitt, An insular environment before and after TYLCV introduction. Editor Henryk Czosnek in Tomato Yellow Leaf Curl Virus Disease, pp.13-23, 2007.

E. Herrbach, N. Sauvion, E. Boudon-padieu, J. Lett, B. Reynaud et al., Une relation trophique originale : La vection entomophile d'agents pathogènes, pp.1-24, 2013.

A. Kvarnheden, J. Lett, and M. Peterschmitt, Mastreviruses transmission. Editor Judith Brown in Vector-Mediated Transmission of Plant Pathogens, 2013.

B. Reynaud, J. Lett, M. Granier, F. Molinaro, Y. Mara et al., Electrical penetration graph from Cicadulina mbila on a susceptible maize hybrid and the fine structure of its stylets pathways, 9th International Auchenorrhyncha Congress, 1997.

B. Reynaud, J. Lett, M. Granier, F. Molinaro, F. Grauer et al., Electrical penetration graph from Cicadulina mbila and its application in plant breeding to screen a potential resistance of maize to MSV transmission, Maize Streak Disease Symposium, 1997.

J. Lett, M. Granier, M. Grondin, S. Blanc, M. Peterschmitt et al., Analyse cellulaire des mécanismes d'acquisition du maize streak virus (MSV) par Cicadulina mbila, 1998.

J. Lett, Caractérisation du comportement alimentaire de Cicadulina mbila (Naude, 1924) sur maïs par électropénétrographie, correlée à la localisation cellulaire des stylets, Travaux Dirigées, Centre National d'Etudes Agronomiques des Régions Chaudes, 1999.

J. Lett, Les virus à Transmission Circulante, 1999.

J. Lett, M. Granier, M. Grondin, I. Hippolyte, B. Reynaud et al., Traquer le MSV dans les entrailles de cicadelles à l'aide de la technique PCR, pp.18-19, 2000.

G. Thébaud, F. Péréfarres, P. Lefeuvre, F. Chiroleu, L. Rimbaud et al., Coexistence of two viral strains in epidemics through assistance in-coinfected hosts, Virus Evolution, 2009.

J. Lett, F. Péréfarres, P. Lefeuvre, F. Chiroleu, L. Rimbaud et al., Long-term viral competition monitoring: a case of epidemiological rescue, 7th International Geminivirus Symposium, Novembrer 3-9, 2013.
URL : https://hal.archives-ouvertes.fr/hal-01456747

M. Abhary, B. Patil, and C. Fauquet, Molecular Biodiversity, Taxonomy, and Nomenclature of Tomato Yellow Leaf Curl-like Viruses, Tomato yellow leaf curl disease, pp.85-118, 2007.
DOI : 10.1007/978-1-4020-4769-5_6

H. M. Alexander, K. E. Mauck, A. E. Whitfield, K. A. Garrett, and C. M. Malmstrom, Plant-virus interactions and the agro-ecological interface, European Journal of Plant Pathology, vol.180, issue.4, pp.529-547, 2014.
DOI : 10.1007/s10658-013-0317-1

E. D. Ammar, D. Gargani, J. M. Lett, and M. Peterschmitt, Large accumulations of maize streak virus in the filter chamber and midgut cells of the leafhopper vector Cicadulina mbila, Archives of Virology, vol.72, issue.2, pp.255-262, 2009.
DOI : 10.1007/s00705-008-0308-2

P. K. Anderson, A. Cunningham, N. G. Patel, F. J. Morales, P. R. Epstein et al., Emerging infectious diseases of plants: pathogen pollution, climate change and agrotechnology drivers, Trends in Ecology & Evolution, vol.19, issue.10, pp.535-544, 2004.
DOI : 10.1016/j.tree.2004.07.021

O. A. Ariyo, M. Koerbler, A. G. Dixon, G. I. Atiri, and S. Winter, Molecular Variability and Distribution of Cassava Mosaic Begomoviruses in Nigeria, Journal of Phytopathology, vol.78, issue.4, pp.226-231, 2005.
DOI : 10.1023/A:1017536512488

I. D. Bedford, R. W. Briddon, J. K. Brown, R. C. Rosell, and P. G. Markham, Geminivirus transmission and biological characterisation of Bemisia tabaci (Gennadius) biotypes from different geographic regions, Annals of Applied Biology, vol.440, issue.4, pp.311-325, 1994.
DOI : 10.1094/Phyto-80-895

L. C. Berrie, K. E. Palmer, E. P. Rybicki, and M. E. Rey, Molecular characterisation of a distinct South African cassava infecting geminivirus, Archives of Virology, vol.143, issue.11, pp.2253-2260, 1998.
DOI : 10.1007/s007050050457

A. J. Betancourt and J. P. Bollback, Fitness effects of beneficial mutations: the mutational landscape model in experimental evolution, Current Opinion in Genetics & Development, vol.16, issue.6, pp.618-623, 2006.
DOI : 10.1016/j.gde.2006.10.006

M. Betancourt, A. Fereres, A. Fraile, and F. García-arenal, Estimation of the Effective Number of Founders That Initiate an Infection after Aphid Transmission of a Multipartite Plant Virus, Journal of Virology, vol.82, issue.24, pp.12416-12421, 2008.
DOI : 10.1128/JVI.01542-08

L. Bigarré, Diversité des Géminivirus et Interactions avec leurs Hôtes, Thèse de doctorat en sciences, 1999.

S. Blanc, M. Uzest, and M. Drucker, New research horizons in vector-transmission of plant viruses, Current Opinion in Microbiology, vol.14, issue.4, pp.483-491, 2011.
DOI : 10.1016/j.mib.2011.07.008

S. L. Blauth, G. A. Churchill, and M. A. Mutschler, Identification of quantitative trait loci associated with acylsugar accumulation using intraspecific populations of the wild tomato, Lycopersicon pennellii, Theoretical and Applied Genetics, vol.96, issue.3-4, pp.458-467, 1998.
DOI : 10.1007/s001220050762

K. R. Bock and B. D. Harrison, African cassava mosaic virus, Annals of Applied Biology, vol.297, 1985.

B. Bottcher, S. Unseld, H. Ceulemans, R. B. Russell, and H. Jeske, Geminate Structures of African Cassava Mosaic Virus, Journal of Virology, vol.78, issue.13, pp.6758-6765, 2004.
DOI : 10.1128/JVI.78.13.6758-6765.2004

V. Brault, E. Herrbach, and C. Reinbold, Electron microscopy studies on luteovirid transmission by aphids, Micron, vol.38, issue.3, pp.302-312, 2007.
DOI : 10.1016/j.micron.2006.04.005

V. Brault, M. Uzest, B. Monsion, E. Jacquot, and S. Blanc, Aphids as transport devices for plant viruses, Comptes Rendus Biologies, vol.333, issue.6-7, pp.524-538, 2010.
DOI : 10.1016/j.crvi.2010.04.001

R. W. Briddon, S. E. Bull, I. Amin, S. Mansoor, I. D. Bedford et al., Diversity of DNA 1: a satellite-like molecule associated with monopartite begomovirus???DNA ?? complexes, Virology, vol.324, issue.2, pp.462-474, 2004.
DOI : 10.1016/j.virol.2004.03.041

R. W. Briddon, S. Mansoor, I. D. Bedford, M. S. Pinner, K. Saunders et al., Identification of DNA Components Required for Induction of Cotton Leaf Curl Disease, Virology, vol.285, issue.2, pp.234-243, 2001.
DOI : 10.1006/viro.2001.0949

R. W. Briddon and J. Stanley, Subviral agents associated with plant single-stranded DNA viruses, Virology, vol.344, issue.1, pp.198-210, 2006.
DOI : 10.1016/j.virol.2005.09.042

URL : http://doi.org/10.1016/j.virol.2005.09.042

S. E. Bull, R. W. Briddon, W. S. Sserubombwe, K. Ngugi, P. G. Markham et al., Genetic diversity and phylogeography of cassava mosaic viruses in Kenya, Journal of General Virology, vol.87, issue.10, pp.3053-3065, 2006.
DOI : 10.1099/vir.0.82013-0

R. Campos-olivas, J. M. Louis, D. Clerot, B. Gronenborn, and A. M. Gronenborn, The structure of a replication initiator unites diverse aspects of nucleic acid metabolism, Proceedings of National Academic of Sciences USA 99, pp.10310-10315, 2002.
DOI : 10.1073/pnas.152342699

URL : https://hal.archives-ouvertes.fr/hal-00137069

S. Cohen and Y. Antignus, Tomato yellow leaf curl virus, a whitefly-borne geminivirus of tomatoes Advances in Disease Vector Research, pp.259-288, 1994.

S. Cohen and I. Harpaz, PERIODIC, RATHER THAN CONTINUAL ACQUISITION OF A NEW TOMATO VIRUS BY ITS VECTOR, THE TOBACCO WHITEFLY (BEMISIA TABACI GENNADIUS)1, Entomologia Experimentalis et Applicata, vol.24, issue.2, pp.155-166, 1964.
DOI : 10.1111/j.1570-7458.1964.tb02435.x

I. Cooper and R. A. Jones, Wild Plants and Viruses: Under???Investigated Ecosystems, Advances in Virus Research, vol.67, pp.1-47, 2006.
DOI : 10.1016/S0065-3527(06)67001-2

H. Czosnek and M. Ghanim, Back to Basics: Are Begomoviruses Whitefly Pathogens?, Journal of Integrative Agriculture, vol.11, issue.2, pp.225-234, 2012.
DOI : 10.1016/S2095-3119(12)60007-0

H. Czosnek, M. Ghanim, S. Morin, G. Rubinstein, V. Fridman et al., Whiteflies: Vectors, and victims (?), of geminiviruses, Advances in Virus Research, vol.57, pp.291-322, 2001.
DOI : 10.1016/S0065-3527(01)57006-2

P. J. Darlington, Competition, Competitive Repulsion, and Coexistence, Proceedings of National Academic of Sciences USA, pp.3151-3155, 1972.
DOI : 10.1073/pnas.69.11.3151

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC389724

A. De-bruyn, J. Villemot, P. Lefeuvre, E. Villar, M. Hoareau et al., East African cassava mosaic-like viruses from Africa to Indian ocean islands: molecular diversity, evolutionary history and geographical dissemination of a bipartite begomovirus, BMC Evolutionary Biology, vol.12, issue.1, 2012.
DOI : 10.1093/oxfordjournals.molbev.a003872

URL : https://hal.archives-ouvertes.fr/hal-01456744

A. C. De-león, Two CMD-Associated DNA sequences Enhance Geminivirus Symptoms and Break Resistance in Cassava and Arabidopsis, 7th International Geminivirus Symposium, p.86, 2009.

H. Delatte, B. Reynaud, J. M. Lett, M. Peterschmitt, M. Granier et al., First molecular identification of a begomovirus in Madagascar, Plant Disease, vol.86, 1404.

H. Delatte, A. Dalmon, D. Rist, I. Soustrade, G. Wuster et al., (Gennadius) from Tomato Fruit, Plant Disease, vol.87, issue.11, pp.1297-1300, 2003.
DOI : 10.1094/PDIS.2003.87.11.1297

H. Delatte, H. Holota, F. Naze, M. Peterschmitt, B. Reynaud et al., The presence of both recombinant and nonrecombinant strains of Tomato yellow leaf curl virus on tomato in Reunion Island, Plant Pathology, vol.83, issue.2, pp.262-262, 2005.
DOI : 10.1111/j.1365-3059.2004.01154.x

H. Delatte and B. Reynaud, A new silverleaf-inducing biotype Ms of Bemisia tabaci (Hemiptera: Aleyrodidae) indigenous to the islands of the south-west Indian Ocean, Bulletin of Entomological Research, vol.562, issue.01, pp.29-35, 2005.
DOI : 10.1111/j.1440-6055.1997.tb01447.x

H. Delatte, D. P. Martin, F. Naze, R. Goldbach, B. Reynaud et al., South West Indian Ocean islands tomato begomovirus populations represent a new major monopartite begomovirus group, Journal of General Virology, vol.86, issue.5, pp.1533-1542, 2005.
DOI : 10.1099/vir.0.80805-0

H. Delatte, P. David, M. Granier, J. M. Lett, R. Goldbach et al., Microsatellites reveal extensive geographical, ecological and genetic contacts between invasive and indigenous whitefly biotypes in an insular environment, Genetical Research, vol.87, issue.02, pp.109-124, 2006.
DOI : 10.1017/S0016672306008135

H. Delatte, H. Holota, B. Reynaud, and J. Dintinger, Characterisation of a Quantitative Resistance to Vector Transmission of Tomato yellow leaf curl virus in Lycopersicon pimpinellifolium, European Journal of Plant Pathology, vol.75, issue.3, p.245, 2006.
DOI : 10.1007/s10658-005-5400-9

H. Delatte, F. Naze, J. S. Cottineau, P. Lefeuvre, B. Hostachy et al., Occurrence of Tomato chlorosis virus on tomato in Reunion Island., Plant Pathology, vol.88, issue.2, pp.289-289, 2006.
DOI : 10.1111/j.1365-3059.2005.01279.x

H. Delatte, H. Holota, B. Moury, B. Reynaud, J. Lett et al., Evidence for a Founder Effect After Introduction of Tomato Yellow Leaf Curl Virus???Mild in an Insular Environment, Journal of Molecular Evolution, vol.7, issue.1, pp.112-118, 2007.
DOI : 10.1007/s00239-007-0005-x

H. Delatte, J. Lett, P. Lefeuvre, B. Reynaud, and M. Peterschmitt, An insular environment before and after TYLCV introduction, pp.13-23, 2007.
DOI : 10.1007/978-1-4020-4769-5_2

A. Dinsdale, L. Cook, C. Riginos, Y. M. Buckley, and P. D. Barro, Refined global analysis of Bemisia tabaci (Hemiptera:Sternorrhyncha: Aleyrodoidea: Aleyrodidae) mitochondrial cytochrome oxidase 1 to identify species level genetic boundaries, pp.196-208, 2010.

S. Duffy and E. C. Holmes, Multiple Introductions of the Old World Begomovirus Tomato yellow leaf curl virus into the New World, Applied and Environmental Microbiology, vol.73, issue.21, pp.7114-7117, 2007.
DOI : 10.1128/AEM.01150-07

S. Engel, T. Heger, R. Mancini, F. Herzog, J. Kartenbeck et al., Role of Endosomes in Simian Virus 40 Entry and Infection, Journal of Virology, vol.85, issue.9, pp.4198-4211, 2011.
DOI : 10.1128/JVI.02179-10

F. Escriu, A. Fraile, and F. Garcia-arenal, Constraints to Genetic Exchange Support Gene Coadaptation in a Tripartite RNA Virus, PLoS Pathogens, vol.29, issue.1, p.8, 2007.
DOI : 10.1371/journal.ppat.0030008.st004

D. Fargette, G. Konaté, C. Fauquet, E. Muller, M. Peterschmitt et al., Molecular Ecology and Emergence of Tropical Plant Viruses, Annual Review of Phytopathology, vol.44, issue.1, pp.235-260, 2006.
DOI : 10.1146/annurev.phyto.44.120705.104644

C. Fauquet and D. Fargette, African Cassava Mosaic Virus: Etiology, Epidemiology, and Control, Plant Disease, vol.74, issue.6, pp.404-411, 1990.
DOI : 10.1094/PD-74-0404

URL : http://horizon.documentation.ird.fr/exl-doc/pleins_textes/pleins_textes_7/b_fdi_55-56/010022168.pdf

C. M. Fauquet, R. W. Briddon, J. K. Brown, E. Moriones, J. Stanley et al., Geminivirus strain demarcation and nomenclature, Archives of Virology, vol.142, issue.4, pp.783-821, 2008.
DOI : 10.1007/s00705-008-0037-6

C. M. Fauquet, S. Sawyer, A. M. Idris, and J. K. Brown, Sequence Analysis and Classification of Apparent Recombinant Begomoviruses Infecting Tomato in the Nile and Mediterranean Basins, Phytopathology, vol.95, issue.5, pp.549-555, 2005.
DOI : 10.1094/PHYTO-95-0549

E. Fiallo-olive, Y. Martinez-zubiaur, E. Moriones, and J. Navas-castillo, A novel class of DNA satellites associated with New World begomoviruses, Virology, vol.426, issue.1, pp.1-6, 2012.
DOI : 10.1016/j.virol.2012.01.024

V. N. Fondong, J. S. Pita, M. E. Rey, A. De-kochko, R. N. Beachy et al., Evidence of synergism between African cassava mosaic virus and a new double-recombinant geminivirus infecting cassava in Cameroon, Journal of General Virology, vol.81, issue.1, pp.287-297, 2000.
DOI : 10.1099/0022-1317-81-1-287

A. W. Franz, F. Van-der-wilk, M. Verbeek, A. M. Dullemans, and J. F. Van-den-heuvel, Faba Bean Necrotic Yellows Virus (Genus Nanovirus) Requires a Helper Factor for Its Aphid Transmission, Virology, vol.262, issue.1, pp.210-219, 1999.
DOI : 10.1006/viro.1999.9904

R. Froissart, J. Doumayrou, F. Vuillaume, S. Alizon, and Y. Michalakis, The virulence-transmission trade-off in vector-borne plant viruses: a review of (non-)existing studies, Philosophical Transactions of the Royal Society B: Biological Sciences, vol.38, issue.12, pp.1907-1918, 2010.
DOI : 10.1094/PHYTO-98-12-1340

S. Ganeshan and D. Abeeluck, First record of the silverleaf whitefly, Bemisia argentifolii Bellows & Perring (Hemiptera : Aleyrodidae), from Mauritius, African Entomology, vol.8, pp.303-304, 2000.

L. M. Ge, J. T. Zhang, X. P. Zhou, and H. Y. Li, Genetic Structure and Population Variability of Tomato Yellow Leaf Curl China Virus, Journal of Virology, vol.81, issue.11, pp.5902-5907, 2007.
DOI : 10.1128/JVI.02431-06

R. L. Gilbertson, New insights into cell-to-cell and long-distance movement of bipartite begomoviruses, 7th International Geminivirus Symposium, p.91, 2009.

M. Ghanim, S. Morin, M. Zeidan, and H. Czosnek, Evidence for Transovarial Transmission of Tomato Yellow Leaf Curl Virus by Its Vector, the WhiteflyBemisia tabaci, Virology, vol.240, issue.2, pp.295-303, 1998.
DOI : 10.1006/viro.1997.8937

M. Ghanim, A review of the mechanisms and components that determine the transmission efficiency of Tomato yellow leaf curl virus (Geminiviridae; Begomovirus) by its whitefly vector, Virus Research, vol.186, 2014.
DOI : 10.1016/j.virusres.2014.01.022

F. E. Gildow, Evidence for Receptor-Mediated Endocytosis Regulating Luteovirus Acquisition by Aphids, Phytopathology, vol.83, issue.3, pp.270-277, 1993.
DOI : 10.1094/Phyto-83-270

Y. Gottlieb, E. Zchori-fein, N. Mozes-daube, S. Kontsedalov, M. Skaljac et al., The Transmission Efficiency of Tomato Yellow Leaf Curl Virus by the Whitefly Bemisia tabaci Is Correlated with the Presence of a Specific Symbiotic Bacterium Species, Journal of Virology, vol.84, issue.18, pp.9310-9317, 2010.
DOI : 10.1128/JVI.00423-10

URL : https://hal.archives-ouvertes.fr/hal-00539500

S. Gray, M. Cilia, and M. Ghanim, Circulative, ???Nonpropagative??? Virus Transmission, Advances in Virus Research, vol.89, pp.141-199, 2014.
DOI : 10.1016/B978-0-12-800172-1.00004-5

M. Harimalala, F. Chiroleu, C. Giraud-carrier, M. Hoareau, I. Zinga et al., Molecular epidemiology of cassava mosaic disease in Madagascar, Plant Pathology, vol.78, issue.3, 2014.
DOI : 10.1111/ppa.12277

URL : https://hal.archives-ouvertes.fr/hal-01456714

M. Harimalala, A. De-bruyn, M. Hoareau, A. Andrianjaka, S. Ranomenjanahary et al., Molecular characterization of a new alphasatellite associated with a cassava mosaic geminivirus in Madagascar, Archives of Virology, vol.37, issue.8, pp.1829-1832, 2013.
DOI : 10.1007/s00705-013-1664-0

URL : https://hal.archives-ouvertes.fr/hal-01456743

M. Harimalala, P. Lefeuvre, A. De-bruyn, F. Tiendrebeogo, M. Hoareau et al., A novel cassava-infecting begomovirus from Madagascar: cassava mosaic Madagascar virus, Archives of Virology, vol.2, issue.10, pp.2027-2030, 2012.
DOI : 10.1007/s00705-012-1399-3

B. D. Harrison, A. M. Lennon, P. R. Massalski, D. J. Robinson, and J. E. Thomas, Geographical variation in geminivirus isolates associated with cassava mosaic disease, Scottish Crop Research Institute. Annual Report, 1987.

B. D. Harrison and D. J. Robinson, ), Annual Review of Phytopathology, vol.37, issue.1, pp.369-398, 1999.
DOI : 10.1146/annurev.phyto.37.1.369

E. Herrbach, N. Sauvion, E. Boudon-padieu, J. Lett, B. Reynaud et al., Une relation trophique originale : La vection entomophile d'agents pathogènes, Des Insectes et des Plantes, pp.1-24, 2013.

R. Hillocks and M. Thresh, Cassava mosaic and cassava brown streak virus diseases in Africa, 2000.

E. C. Holmes and A. Rambaut, Viral evolution and the emergence of SARS coronavirus, Philosophical Transactions of the Royal Society B: Biological Sciences, vol.359, issue.1447, pp.1059-1065, 2004.
DOI : 10.1098/rstb.2004.1478

A. M. Idris and J. K. Brown, Molecular analysis of Cotton leaf curl virus-Sudan reveals an evolutionary history of recombination, Virus Genes, vol.24, issue.3, pp.249-256, 2002.
DOI : 10.1023/A:1015380600089

A. K. Inoue-nagata, L. C. Albuquerque, W. B. Rocha, and T. Nagata, A simple method for cloning the complete begomovirus genome using the bacteriophage ??29 DNA polymerase, Journal of Virological Methods, vol.116, issue.2, pp.209-211, 2004.
DOI : 10.1016/j.jviromet.2003.11.015

M. Isnard, M. Granier, R. Frutos, B. Reynaud, and M. Peterschmitt, Quasispecies nature of three maize streak virus isolates obtained through different modes of selection from a population used to assess response to infection of maize cultivars., Journal of General Virology, vol.79, issue.12, pp.3091-3099, 1998.
DOI : 10.1099/0022-1317-79-12-3091

H. Jeske, M. Lutgemeier, and W. Preiss, DNA forms indicate rolling circle and recombination-dependent replication of Abutilon mosaic virus, The EMBO Journal, vol.20, issue.21, pp.6158-6167, 2001.
DOI : 10.1093/emboj/20.21.6158

Y. X. Jiang, C. Deblas, L. Barrios, and A. Fereres, Correlation Between Whitefly (Homoptera: Aleyrodidae) Feeding Behavior and Transmission of Tomato Yellow Leaf Curl Virus, Annals of the Entomological Society of America, vol.93, issue.3, pp.573-579, 2000.
DOI : 10.1603/0013-8746(2000)093[0573:CBWHAF]2.0.CO;2

R. A. Jones, Plant virus emergence and evolution: Origins, new encounter scenarios, factors driving emergence, effects of changing world conditions, and prospects for control, Virus Research, vol.141, issue.2, pp.113-130, 2009.
DOI : 10.1016/j.virusres.2008.07.028

K. Just, W. N. Leke, M. N. Sattar, A. Luik, and A. Kvarnheden, Detection of Tomato yellow leaf curl virus in imported tomato fruit in northern Europe, Plant Pathology, 2014.

F. M. Kimmins and N. A. Bosque-perez, Electrical penetration graphs from Cicadulina spp. and the inoculation of a persistent virus into maize, Entomologia Experimentalis et Applicata, vol.125, issue.1, pp.46-49, 1996.
DOI : 10.1111/j.1570-7458.1996.tb00883.x

A. Kliot, M. Cilia, H. Czosnek, and M. Ghanim, Implication of the Bacterial Endosymbiont Rickettsia spp. in Interactions of the Whitefly Bemisia tabaci with Tomato yellow leaf curl virus, Journal of Virology, vol.88, issue.10, pp.5652-5660, 2014.
DOI : 10.1128/JVI.00071-14

P. Lefeuvre, H. Delatte, F. Naze, W. Dogley, B. Reynaud et al., A new tomato leaf curl virus from the Seychelles archipelago, Plant Pathology, vol.56, issue.2, pp.342-342, 2007.
DOI : 10.1094/Phyto-86-1288

P. Lefeuvre, J. Lett, B. Reynaud, and D. P. Martin, Avoidance of Protein Fold Disruption in Natural Virus Recombinants, PLoS Pathogens, vol.20, issue.11, pp.181-181, 2007.
DOI : 10.1371/journal.ppat.0030181.st002

P. Lefeuvre, D. P. Martin, M. Hoareau, F. Naze, H. Delatte et al., Begomovirus 'melting pot' in the south-west Indian Ocean islands: molecular diversity and evolution through recombination, Journal of General Virology, vol.88, issue.12, pp.3458-3468, 2007.
DOI : 10.1099/vir.0.83252-0

P. Lefeuvre, J. M. Lett, . Varsani, and D. P. Martin, Widely Conserved Recombination Patterns among Single-Stranded DNA Viruses, Journal of Virology, vol.83, issue.6, pp.2697-2707, 2009.
DOI : 10.1128/JVI.02152-08

URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2648288

P. Lefeuvre, D. P. Martin, G. Harkins, P. Lemey, A. J. Gray et al., The Spread of Tomato Yellow Leaf Curl Virus from the Middle East to the World, PLoS Pathogens, vol.89, issue.1, pp.1001164-1001164, 2010.
DOI : 10.1371/journal.ppat.1001164.s008

J. P. Legg and C. M. Fauquet, Cassava mosaic geminiviruses in Africa, Plant Molecular Biology, vol.79, issue.4, pp.585-599, 2004.
DOI : 10.1007/s11103-004-1651-7

J. M. Lett, H. Delatte, F. Naze, and B. Reynaud, A New Tomato leaf curl virus from Mayotte, Plant Disease, vol.88, issue.6, pp.681-681, 2004.
DOI : 10.1094/PDIS.2004.88.6.681B

J. M. Lett, M. Granier, M. Grondin, P. Turpin, F. Molinaro et al., Electrical penetration graphs from Cicadulina mbila on maize, the fine structure of its stylet pathways and consequences for virus transmission efficiency, Entomologia Experimentalis et Applicata, vol.101, issue.2, pp.93-109, 2001.
DOI : 10.1046/j.1570-7458.2001.00895.x

J. M. Lett, B. Reynaud, and M. Peterschmitt, Les mécanismes de la transmission circulante des virus de plante par insecte piqueurs -suceurs, Virologie, vol.5, pp.169-181, 2001.

J. M. Lett, M. Granier, I. Hippolyte, M. Grondin, M. Royer et al., Monitored by Conventional and Quantitative Polymerase Chain Reaction, Phytopathology, vol.92, issue.1, pp.65-74, 2002.
DOI : 10.1094/PHYTO.2002.92.1.65

J. M. Lett, F. Lefeuvre, F. Naze, H. Delatte, Y. Mohamed-ali et al., First report of Tobacco leaf curl Zimbabwe virus affecting tobacco in the Comoros Archipelago, Plant Pathology, vol.86, issue.4, pp.567-567, 2006.
DOI : 10.1099/vir.0.80805-0

J. M. Lett, P. Lefeuvre, L. Couston, M. Hoareau, M. Thierry et al., Complete genomic sequences of Tomato yellow leaf curl Mali virus isolates infecting tomato and pepper from the North Province of Cameroon, Archives of Virology, vol.153, issue.3, pp.535-540, 2009.
DOI : 10.1007/s00705-009-0313-0

E. Lombaert, T. Guillemaud, J. Cornuet, T. Malausa, B. Facon et al., Bridgehead Effect in the Worldwide Invasion of the Biocontrol Harlequin Ladybird, PLoS ONE, vol.5, issue.3, pp.9743-9743, 2010.
DOI : 10.1371/journal.pone.0009743.s007

J. B. Luan, J. M. Li, N. Varela, Y. L. Wang, F. F. Li et al., Global Analysis of the Transcriptional Response of Whitefly to Tomato Yellow Leaf Curl China Virus Reveals the Relationship of Coevolved Adaptations, Journal of Virology, vol.85, issue.7, pp.3330-3340, 2011.
DOI : 10.1128/JVI.02507-10

C. M. Malmstrom, U. Melcher, and N. A. Bosque-perez, The expanding field of plant virus ecology: Historical foundations, knowledge gaps, and research directions, Virus Research, vol.159, issue.2, pp.84-94, 2011.
DOI : 10.1016/j.virusres.2011.05.010

S. Mansoor, R. W. Briddon, Y. Zafar, and J. Stanley, Geminivirus disease complexes: an emerging threat, Trends in Plant Science, vol.8, issue.3, pp.128-134, 2003.
DOI : 10.1016/S1360-1385(03)00007-4

B. Martin, J. L. Collar, W. F. Tjallingii, and A. Fereres, Intracellular ingestion and salivation by aphids may cause the acquisition and inoculation of non-persistently transmitted plant viruses., Journal of General Virology, vol.78, issue.10, pp.2701-2705, 1997.
DOI : 10.1099/0022-1317-78-10-2701

D. Martin and D. Shepherd, The epidemiology, economic impact and control of maize streak disease, Food Security, vol.92, issue.3, pp.305-315, 2009.
DOI : 10.1007/s12571-009-0023-1

D. P. Martin, P. Lefeuvre, A. Varsani, M. Hoareau, J. Semegni et al., Complex Recombination Patterns Arising during Geminivirus Coinfections Preserve and Demarcate Biologically Important Intra-Genome Interaction Networks, PLoS Pathogens, vol.300, issue.9, pp.1002203-1002203, 2011.
DOI : 10.1371/journal.ppat.1002203.s005

D. P. Martin, E. Van-der-walt, D. Posada, and E. P. Rybicki, The Evolutionary Value of Recombination Is Constrained by Genome Modularity, PLoS Genetics, vol.16, issue.4, p.51, 2005.
DOI : 1367-4803(2000)016[0573:SAMCPF]2.0.CO;2

M. N. Maruthi, S. Seal, J. Colvin, R. W. Briddon, and S. E. Bull, East African cassava mosaic Zanzibar virus ? a recombinant begomovirus species with a mild phenotype, Archives of Virology, vol.149, issue.12, pp.2365-2377, 2004.
DOI : 10.1007/s00705-004-0380-1

D. Massé, P. Lefeuvre, H. Delatte, A. L. Karime, B. Hostachy et al., Tomato chlorosis virus: first report in Mayotte Island, Plant Pathology, vol.57, issue.2, pp.388-388, 2008.
DOI : 10.1023/A:1008738130592

T. A. Melgarejo, T. Kon, M. R. Rojas, L. Paz-carrasco, F. M. Zerbini et al., Characterization of a New World Monopartite Begomovirus Causing Leaf Curl Disease of Tomato in Ecuador and Peru Reveals a New Direction in Geminivirus Evolution, Journal of Virology, vol.87, issue.10, pp.5397-5413, 2013.
DOI : 10.1128/JVI.00234-13

A. Momotaz, J. W. Scott, and D. J. Schuster, Identification of Quantitative Trait Loci Conferring Resistance to Bemisia tabaci in an F-2 Population of Solanum lycopersicum x Solanum habrochaites Accession LA1777, Journal of the American Society for Horticultural Science, vol.135, pp.134-142, 2010.

G. Monde, J. Walangululu, S. Winter, and C. Bragard, Dual infection by cassava begomoviruses in two leguminous species (Fabaceae) in Yangambi, Northeastern Democratic Republic of Congo, Archives of Virology, vol.78, issue.3, pp.1865-1869, 2010.
DOI : 10.1007/s00705-010-0772-3

A. L. Monjane, G. W. Harkins, D. P. Martin, P. Lemey, P. Lefeuvre et al., Reconstructing the History of Maize Streak Virus Strain A Dispersal To Reveal Diversification Hot Spots and Its Origin in Southern Africa, Journal of Virology, vol.85, issue.18, pp.9623-9636, 2011.
DOI : 10.1128/JVI.00640-11

B. Moury, F. Fabre, and R. Senoussi, Estimation of the number of virus particles transmitted by an insect vector, Proceedings of the National Academy of Sciences, vol.104, issue.45, pp.17891-17896, 2007.
DOI : 10.1073/pnas.0702739104

M. Mubin, R. W. Briddon, and S. Mansoor, Complete nucleotide sequence of chili leaf curl virus and its associated satellites naturally infecting potato in Pakistan, Archives of Virology, vol.25, issue.2, pp.365-368, 2009.
DOI : 10.1007/s00705-008-0296-2

S. G. Muigai, D. J. Schuster, J. C. Snyder, J. W. Scott, M. J. Bassett et al., Mechanisms of resistance inLycopersicon germplasm to the whiteflyBemisia argentifolii, Phytoparasitica, vol.114, issue.4, pp.347-360, 2002.
DOI : 10.1007/BF02979682

J. Navas-castillo, E. Fiallo-olive, and S. Sanchez-campos, Emerging Virus Diseases Transmitted by Whiteflies, Annual Review of Phytopathology, vol.49, issue.1, pp.219-248, 2011.
DOI : 10.1146/annurev-phyto-072910-095235

M. S. Nawaz-ul-rehman and C. M. Fauquet, Evolution of geminiviruses and their satellites, FEBS Letters, vol.84, issue.12, pp.1825-1832, 2009.
DOI : 10.1016/j.febslet.2009.05.045

J. Ndunguru, J. P. Legg, T. A. Aveling, G. Thompson, and C. M. Fauquet, Molecular biodiversity of cassava begomoviruses in Tanzania: evolution of cassava geminiviruses in Africa and evidence for East Africa being a center of diversity of cassava geminiviruses, Virology Journal, vol.2, issue.21, 2005.

F. O. Ogbe, A. G. Dixon, J. D. Hughes, O. J. Alabi, and R. Okechukwu, Status of Cassava Begomoviruses and Their New Natural Hosts in Nigeria, Plant Disease, vol.90, issue.5, pp.548-553, 2006.
DOI : 10.1094/PD-90-0548

J. Ohnishi, T. Kitamura, F. Terami, and K. Honda, A selective barrier in the midgut epithelial cell membrane of the nonvector whitefly Trialeurodes??vaporariorum to Tomato yellow leaf curl virus uptake, Journal of General Plant Pathology, vol.72, issue.2, pp.131-139, 2009.
DOI : 10.1007/s10327-009-0147-3

K. M. Oliver, P. H. Degnan, G. R. Burke, and N. A. Moran, Facultative Symbionts in Aphids and the Horizontal Transfer of Ecologically Important Traits, Annual Review of Entomology, vol.55, issue.1, pp.247-266, 2010.
DOI : 10.1146/annurev-ento-112408-085305

S. P. Otto and A. C. Gerstein, Why have sex? The population genetics of sex and recombination, Biochemical Society Transactions, vol.34, issue.4, pp.519-522, 2006.
DOI : 10.1042/BST0340519

B. E. Owor, D. P. Martin, D. N. Shepherd, R. Edema, A. L. Monjane et al., Genetic analysis of maize streak virus isolates from Uganda reveals widespread distribution of a recombinant variant, Journal of General Virology, vol.88, issue.11, pp.3154-3165, 2007.
DOI : 10.1099/vir.0.83144-0

M. Padidam, S. Sawyer, and C. M. Fauquet, Possible Emergence of New Geminiviruses by Frequent Recombination, Virology, vol.265, issue.2, pp.218-225, 1999.
DOI : 10.1006/viro.1999.0056

D. Pande, S. Kraberger, P. Lefeuvre, J. M. Lett, D. N. Shepherd et al., A novel maize-infecting mastrevirus from La R??union Island, Archives of Virology, vol.7, issue.Pt 5, pp.1617-1621, 2012.
DOI : 10.1007/s00705-012-1314-y

B. L. Patil and C. M. Fauquet, Cassava mosaic geminiviruses: actual knowledge and perspectives, Molecular Plant Pathology, vol.2, issue.5, pp.685-701, 2009.
DOI : 10.1111/j.1364-3703.2009.00559.x

F. Péréfarres, G. Thébaud, P. Lefeuvre, F. Chiroleu, L. Rimbaud et al., Frequency-dependent assistance as a way out of competitive exclusion between two strains of an emerging virus, Proceedings of the Royal Society B: Biological Sciences, vol.398, issue.6726, 2014.
DOI : 10.1038/18913

F. Péréfarres, M. Thierry, N. Becker, P. Lefeuvre, B. Reynaud et al., Biological Invasions of Geminiviruses: Case Study of TYLCV and Bemisia tabaci in Reunion Island, Viruses, vol.4, issue.12, pp.3665-3688, 2012.
DOI : 10.3390/v4123665

M. Peterschmitt, M. Granier, R. Mekdoud, A. Dalmon, O. Gambin et al., First Report of Tomato Yellow Leaf Curl Virus in R??union Island, Plant Disease, vol.83, issue.3, pp.303-303, 1999.
DOI : 10.1094/PDIS.1999.83.3.303B

B. Pico, M. J. Diez, and F. Nuez, Viral diseases causing the greatest economic losses to the tomato crop. II. The Tomato yellow leaf curl virus ??? a review, Scientia Horticulturae, vol.67, issue.3-4, pp.151-196, 1996.
DOI : 10.1016/S0304-4238(96)00945-4

P. Reckhaus, Maladies et ravageurs des cultures maraîcheres: A l'exemple de Madagascar, 1997.

B. Reynaud, Transmission des virus de la striure, du stripe et de la mosaïque du maïs par leurs vecteurs Cicadulina mbila (Naude, 1924) et Peregrinus maidis (Ashmead, 1890)(Homoptera), p.173, 1988.

B. M. Reynaud and P. , A study of the mode of transmission of maize streak virus by Cicadulina mbila using an enzyme-linked immunosorbent assay, Annals of Applied Biology, vol.87, issue.1, pp.85-94, 1992.
DOI : 10.1098/rspb.1938.0037

M. R. Rojas, C. Hagen, W. J. Lucas, and R. L. Gilbertson, Exploiting Chinks in the Plant's Armor: Evolution and Emergence of Geminiviruses, Annual Review of Phytopathology, vol.43, issue.1, pp.361-394, 2005.
DOI : 10.1146/annurev.phyto.43.040204.135939

M. J. Roossinck, P. Saha, G. B. Wiley, J. Quan, J. D. White et al., Ecogenomics: using massively parallel pyrosequencing to understand virus ecology, Molecular Ecology, vol.437, pp.81-88, 2010.
DOI : 10.1111/j.1365-294X.2009.04470.x

R. C. Rosell, I. Torres-jerez, and J. K. Brown, Tracing the Geminivirus-Whitefly Transmission Pathway by Polymerase Chain Reaction in Whitefly Extracts, Saliva, Hemolymph, and Honeydew, Phytopathology, vol.89, issue.3, pp.239-246, 1999.
DOI : 10.1094/PHYTO.1999.89.3.239

A. A. Sanderfoot and S. G. Lazarowitz, Cooperation in Viral Movement: The Geminivirus BL1 Movement Protein Interacts with BR1 and Redirects It from the Nucleus to the Cell Periphery, THE PLANT CELL ONLINE, vol.7, issue.8, pp.1185-1194, 1995.
DOI : 10.1105/tpc.7.8.1185

M. N. Sattar, A. Kvarnheden, M. Saeed, and R. W. Briddon, Cotton leaf curl disease - an emerging threat to cotton production worldwide, Journal of General Virology, vol.94, issue.Pt_4, pp.695-710, 2013.
DOI : 10.1099/vir.0.049627-0

K. Saunders, I. D. Bedford, R. W. Briddon, P. G. Markham, S. M. Wong et al., A unique virus complex causes Ageratum yellow vein disease, Proceedings of the National Academy of Sciences of the United States of America, pp.6890-6895, 2000.
DOI : 10.1073/pnas.97.12.6890

K. Saunders, A. Lucy, and J. Stanley, RNA-primed complementary-sense DNA synthesis of the geminivirus African cassava mosaic virus, Nucleic Acids Research, vol.20, issue.23, pp.6311-6315, 1992.
DOI : 10.1093/nar/20.23.6311

K. Saunders, A. Norman, S. Gucciardo, and J. Stanley, The DNA ?? satellite component associated with ageratum yellow vein disease encodes an essential pathogenicity protein (??C1), Virology, vol.324, issue.1, pp.37-47, 2004.
DOI : 10.1016/j.virol.2004.03.018

K. Saunders, N. Salim, V. R. Mali, V. G. Malathi, R. Briddon et al., Characterisation of Sri Lankan Cassava Mosaic Virus and Indian Cassava Mosaic Virus: Evidence for Acquisition of a DNA B Component by a Monopartite Begomovirus, Virology, vol.293, issue.1, pp.63-74, 2002.
DOI : 10.1006/viro.2001.1251

S. E. Seal, M. J. Jeger, and F. Van-den-bosch, Begomovirus Evolution and Disease Management, Plant Virus Epidemiology, vol.67, pp.297-316, 2006.
DOI : 10.1016/S0065-3527(06)67008-5

D. N. Shepherd, D. P. Martin, E. Van-der-walt, K. Dent, A. Varsani et al., Maize streak virus: an old and complex ??????emerging?????? pathogen, Molecular Plant Pathology, vol.92, issue.1, pp.1-12, 2010.
DOI : 10.1111/j.1364-3703.2009.00568.x

A. T. Simmons and G. M. Gurr, Trichomes of Lycopersicon species and their hybrids: effects on pests and natural enemies, Agricultural and Forest Entomology, vol.207, issue.4, pp.265-276, 2005.
DOI : 10.1007/BF00192139

X. H. Sinisterra, C. L. Mckenzie, W. B. Hunter, C. A. Powell, and R. G. Shatters, Differential transcriptional activity of plant-pathogenic begomoviruses in their whitefly vector (Bemisia tabaci, Gennadius: Hemiptera Aleyrodidae), Journal of General Virology, vol.86, issue.5, pp.1525-1532, 2005.
DOI : 10.1099/vir.0.80665-0

H. H. Storey, Investigations of the Mechanism of the Transmission of Plant Viruses by Insect Vectors. II. The Part Played by Puncture in Transmission, Proceedings of the Royal Society B: Biological Sciences, vol.125, issue.841, pp.455-477, 1938.
DOI : 10.1098/rspb.1938.0037

G. Sunter and D. M. Bisaro, Regulation of a Geminivirus Coat Protein Promoter by AL2 Protein (TrAP): Evidence for Activation and Derepression Mechanisms, Virology, vol.232, issue.2, pp.269-280, 1997.
DOI : 10.1006/viro.1997.8549

M. M. Swanson and B. D. Harrison, Properties, relationships and distribution of cassava mosaic geminiviruses, Tropical Science, vol.34, pp.15-25, 1994.

M. Thierry, N. Becker, A. Hajri, B. Reynaud, J. M. Lett et al., Symbiont diversity and non-random hybridization among indigenous (Ms) and invasive (B) biotypes of Bemisia tabaci, Molecular Ecology, vol.54, issue.10, pp.2172-2187, 2011.
DOI : 10.1111/j.1365-294X.2011.05087.x

F. Tiendrébéogo, P. Lefeuvre, M. Hoareau, V. S. Traore, N. Barro et al., -Uganda (EACMV-UG) in Burkina Faso, Plant Pathology, vol.126, issue.4, pp.783-783, 2009.
DOI : 10.1111/j.1365-3059.2009.02110.x

F. Tiendrébéogo, P. Lefeuvre, M. Hoareau, J. Villemot, G. Konaté et al., Molecular diversity of Cotton leaf curl Gezira virus isolates and their satellite DNAs associated with okra leaf curl disease in Burkina Faso, Virology Journal, vol.7, issue.1, p.48, 2010.
DOI : 10.1186/1743-422X-7-48

F. Tiendrébéogo, V. S. Traoré, J. M. Lett, N. Barro, G. Konaté et al., Impact of okra leaf curl disease on morphology and yield of okra, Crop Protection, vol.29, issue.7, pp.712-716, 2010.
DOI : 10.1016/j.cropro.2010.02.007

F. Tiendrébéogo, P. Lefeuvre, M. Hoareau, M. A. Harimalala, A. De-bruyn et al., Evolution of African cassava mosaic virus by recombination between bipartite and monopartite begomoviruses, Virology Journal, vol.9, issue.1, 2012.
DOI : 10.1093/nar/gki352

M. Uchibori, A. Hirata, M. Suzuki, and M. Ugaki, Tomato yellow leaf curl virus accumulates in vesicle-like structures in descending and ascending midgut epithelial cells of the vector whitefly, Bemisia tabaci, but not in those of nonvector whitefly Trialeurodes vaporariorum, Journal of General Plant Pathology, vol.82, issue.2, pp.115-122, 2013.
DOI : 10.1007/s10327-012-0426-2

J. F. Van-den-heuvel, A. Bruyere, S. A. Hogenhout, V. Ziegler-graff, V. Brault et al., The N-terminal region of the luteovirus readthrough domain determines virus binding to Buchnera GroEL and is essential for virus persistence in the aphid, Journal of Virololy, vol.71, pp.7258-7265, 1997.

J. F. Van-den-heuvel, M. Verbeek, and F. Van-der-wilk, Endosymbiotic bacteria associated with circulative transmission of potato leafroll virus by Myzus persicae, Journal of General Virology, vol.75, issue.10, pp.2559-2565, 1994.
DOI : 10.1099/0022-1317-75-10-2559

R. Vanitharani, P. Chellappan, and C. M. Fauquet, Geminiviruses and RNA silencing, Trends in Plant Science, vol.10, issue.3, pp.144-151, 2005.
DOI : 10.1016/j.tplants.2005.01.005

R. Vanitharani, P. Chellappan, J. S. Pita, and C. M. Fauquet, Differential Roles of AC2 and AC4 of Cassava Geminiviruses in Mediating Synergism and Suppression of Posttranscriptional Gene Silencing, Journal of Virology, vol.78, issue.17, pp.9487-9498, 2004.
DOI : 10.1128/JVI.78.17.9487-9498.2004

A. Varsani, A. L. Monjane, L. Donaldson, S. Oluwafemi, I. Zinga et al., Comparative analysis of Panicum streak virus and Maize streak virus diversity, recombination patterns and phylogeography, Virology Journal, vol.6, issue.1, 2009.
DOI : 10.1186/1743-422X-6-194

A. Varsani, J. Navas-castillo, E. Moriones, C. Hernandez-zepeda, A. Idris et al., Establishment of three new genera in the family Geminiviridae: Becurtovirus, Eragrovirus and Turncurtovirus, Archives of Virology, vol.36, issue.4, 2014.
DOI : 10.1007/s00705-014-2050-2

A. Varsani, D. N. Shepherd, A. L. Monjane, B. E. Owor, J. B. Erdmann et al., Recombination, decreased host specificity and increased mobility may have driven the emergence of maize streak virus as an agricultural pathogen, Journal of General Virology, vol.89, issue.9, pp.2063-2074, 2008.
DOI : 10.1099/vir.0.2008/003590-0

A. Varsani, D. N. Shepherd, A. L. Monjane, B. E. Owor, J. B. Erdmann et al., Recombination, decreased host specificity and increased mobility may have driven the emergence of maize streak virus as an agricultural pathogen, Journal of General Virology, vol.89, issue.9, pp.2063-2074, 2008.
DOI : 10.1099/vir.0.2008/003590-0

C. A. Voigt, C. Martinez, Z. G. Wang, S. L. Mayo, and F. H. Arnold, Protein building blocks preserved by recombination, Nature Structural Biology, vol.9, pp.553-558, 2002.
DOI : 10.1038/nsb805

O. Voinnet, Y. M. Pinto, and D. Baulcombe, Suppression of gene silencing: A general strategy used by diverse DNA and RNA viruses of plants, Proceedings of the National Academy of Sciences, vol.96, issue.24, pp.14147-14152, 1999.
DOI : 10.1073/pnas.96.24.14147

O. H. Warburg, Die kulturplanzen usambaras. Mitteilung Aus Den Deutschen Schutzgebieten 7, p.131, 1894.

A. M. Yassin and M. A. Nour, Tomato leaf curl diseases in the Sudan and their relation to tobacco leaf curl, Annals of Applied Biology, vol.65, issue.72, pp.207-217, 1965.
DOI : 10.1111/j.1744-7348.1965.tb01228.x

X. Zhou, Y. Liu, L. Calvert, C. Munoz, G. W. Otim-nape et al., Evidence that DNA-A of a geminivirus associated with severe cassava mosaic disease in Uganda has arisen by interspecific recombination., Journal of General Virology, vol.78, issue.8, pp.2101-2111, 1997.
DOI : 10.1099/0022-1317-78-8-2101

X. Zhou, D. J. Robinson, and B. D. Harrison, Types of variation in DNA-A among isolates of East African cassava mosaic virus from Kenya, Malawi and Tanzania., Journal of General Virology, vol.79, issue.11, pp.2835-2840, 1998.
DOI : 10.1099/0022-1317-79-11-2835

I. Zinga, F. Chiroleu, J. Legg, P. Lefeuvre, E. K. Komba et al., Epidemiological assessment of cassava mosaic disease in Central African Republic reveals the importance of mixed viral infection and poor health of plant cuttings, Crop Protection, vol.44, pp.6-12, 2013.
DOI : 10.1016/j.cropro.2012.10.010

URL : https://hal.archives-ouvertes.fr/hal-01456748

I. Zinga, M. Harimalala, A. De-bruyn, M. Hoareau, N. Mandakombo et al., East African cassava mosaic virus-Uganda (EACMV-UG) and African cassava mosaic virus (ACMV) reported for the first time in Central African Republic and Chad, New Disease Reports, vol.26, p.17, 2012.
DOI : 10.5197/j.2044-0588.2012.026.017